View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0474_low_2 (Length: 495)
Name: NF0474_low_2
Description: NF0474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0474_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 32216407 - 32216842
Alignment:
| Q |
1 |
caattgaattttgggaaatcctacatggttgcatatataacacggttgaattgacaaacgtcgatgctaaatccaacatgtcttgcatatgcaccataaa |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32216407 |
caattgaattttgggaaatcctacatagttgcatatataacacggttgaattgacaaacgtcgatgctaaatccaacatgtcttgcatatgcaccataaa |
32216506 |
T |
|
| Q |
101 |
atgactttgcagattcttcaaattcaaacatcatgccgactcgtgctttcctatttccattaccatctttatcatgcccctgtctttcagccgagtttgc |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | | ||||||||| |||||||||| |
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| T |
32216507 |
atgactttgcagattcttcagattcaaacatcatgccgactcgtgctttcctatttacattaccatctttatcattcacttgtctttcaaccgagtttgc |
32216606 |
T |
|
| Q |
201 |
agtcatacttcgttccttgtctgtcttagtttcatcattttctaaaataggtttattatcactgtttttcccttcatcatgtgcttcaacttccaccata |
300 |
Q |
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||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32216607 |
agtcatacttcgttccttgcctttcttagtttcatcattttctaaaacaggtttattatcactgtttttcccttcatcctgtgcttcaacttccaccata |
32216706 |
T |
|
| Q |
301 |
gtgtagccaatggtaagatatactttaattggcttctcttgaaagactgggaaaacttacttggcttatacttttacaacaatgactgaaattatcagca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||| ||||| |
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| T |
32216707 |
gtgtagccaatggtaagatatactttaattggcttctcttgaaagactaggaaaacttacttcgcttatacttttacagcaatgactgaaattaccagca |
32216806 |
T |
|
| Q |
401 |
atatctacctacacagggcattggtgatgatgtcca |
436 |
Q |
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|||||||||||||||| |||||||||| |||||||| |
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| T |
32216807 |
atatctacctacacagtgcattggtgaagatgtcca |
32216842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 37 - 433
Target Start/End: Complemental strand, 32216395 - 32215998
Alignment:
| Q |
37 |
ataacacggttgaattgacaaacgtcgatgctaaatccaacatgtcttgcatatgcaccataaaatgactttgcagattcttcaaattcaaacatcatgc |
136 |
Q |
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||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32216395 |
ataacacagttgaattgacaaacgtacatgctaaatcctacatgtcttgcatatgcaccataaaatgactttgcagattcttcagattcaaacatcatgc |
32216296 |
T |
|
| Q |
137 |
cgactcgtgctttcctatttccattaccatctttatcatgcccctgtctttcagccgagtttgcagtcatacttcgttccttgtctgtcttagtttcatc |
236 |
Q |
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| T |
32216295 |
caactcgtggtttcctatttccattaccatctttatcattcacttgtctttcagccgagtttatagtcatacttcgttccttgcctttcttagtttcatc |
32216196 |
T |
|
| Q |
237 |
attttctaaaataggtttattatcactgtttttcccttcatcatgtgcttcaacttccaccatagtgtagccaatggtaagatatactttaattggcttc |
336 |
Q |
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| T |
32216195 |
attttctaaaacatgtttattatcaatgtttttcccttcatcctgt-cttcaacttccatcatagtgtagccaatggtgaga-atactttaattggcttc |
32216098 |
T |
|
| Q |
337 |
tcttgaaagactgggaaaacttacttggcttatacttttacaacaatgactgaaattatcagcaatat---ctacctacacagggcattggtgatgatgt |
433 |
Q |
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|||||| ||||| |||||| |||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||| ||||||||||| ||||| |
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| T |
32216097 |
tcttgacagactaggaaaatttacttggcttatacttttacagcaatgactgaaattaccagcaatatctactacctacacaaggcattggtgaagatgt |
32215998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 44 - 175
Target Start/End: Original strand, 16837441 - 16837572
Alignment:
| Q |
44 |
ggttgaattgacaaacgtcgatgctaaatccaacatgtcttgcatatgcaccataaaatgactttgcagattcttcaaattcaaacatcatgccgactcg |
143 |
Q |
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||||||||||||||| | ||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||| | ||||||| |||||||||||||| |
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| T |
16837441 |
ggttgaattgacaaaagccgatgctaaatcctacatgtcttgcatatgcactataaaatgacactgcagattctttagattcaaagatcatgccgactcg |
16837540 |
T |
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| Q |
144 |
tgctttcctatttccattaccatctttatcat |
175 |
Q |
| |
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|| ||||||||||||||||||||||||||||| |
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| T |
16837541 |
tggtttcctatttccattaccatctttatcat |
16837572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 268 - 433
Target Start/End: Original strand, 16837572 - 16837736
Alignment:
| Q |
268 |
ttcccttcatcatgtgcttcaacttccaccatagtgtagccaatggtaagatatactttaattggcttctcttgaaa-gactgggaaaacttacttgg-c |
365 |
Q |
| |
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|||||||| ||||||||||||||||||| |||| ||||||||||| ||||| |||||||||| |||||||||| ||| || | |||||| ||||||| | |
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| T |
16837572 |
ttcccttcgtcatgtgcttcaacttccatcatattgtagccaatg-taaga-atactttaat-ggcttctctttaaaagattaggaaaatttacttgtac |
16837668 |
T |
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| Q |
366 |
ttatacttttacaacaatgactgaaattatcagcaatatctacctacacagggcattggtgatgatgt |
433 |
Q |
| |
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||||||||||||| |||||||||||||| ||||||| |||||||||||| ||||||||| ||||| |
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| T |
16837669 |
ttatacttttacagcaatgactgaaattggcagcaatgtctacctacacaaaacattggtgaagatgt |
16837736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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