View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0474_low_5 (Length: 288)
Name: NF0474_low_5
Description: NF0474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0474_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 28547990 - 28547786
Alignment:
| Q |
1 |
tgcagtgtcgtaacaattgctgccatttcaatgattgagatgcttttcatagagatgacatgtactatatcgcggtgtcatgacaactgttgcaattatt |
100 |
Q |
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| T |
28547990 |
tgcagtgtcgtaacaattgctgccatttcaatgattgagatgcttttcatagagatgacatgtactatatcgcggtgtcatgacaactgttgca------ |
28547897 |
T |
|
| Q |
101 |
gactgcatcggtgataacacatagatctgtggacgtatcatcatagaccgtctaacattgaatctcattgtttaataagccaactgcaattccattttag |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28547896 |
-------tcggtgataacgcatagatctgtggacgtatcatcataaaccgtctaacattaaatctcattgtttaataagccaactgcaattccattttag |
28547804 |
T |
|
| Q |
201 |
caggcttctgttatgctc |
218 |
Q |
| |
|
|||||||||||||||||| |
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| T |
28547803 |
caggcttctgttatgctc |
28547786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 41868420 - 41868624
Alignment:
| Q |
1 |
tgcagtgtcgtaacaattgctgccatttcaatgattgagatgcttttcatagagatgacatgtactatatcgcggtgtcatgacaactgttgcaattatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41868420 |
tgcagtgtcgtaacaattgctgccatttcaatgattgagatgcttttcatagagatgacatgtactatatcgcggtgtcatgacaactgttgca------ |
41868513 |
T |
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| Q |
101 |
gactgcatcggtgataacacatagatctgtggacgtatcatcatagaccgtctaacattgaatctcattgtttaataagccaactgcaattccattttag |
200 |
Q |
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| T |
41868514 |
-------tcggtgataacgcatagatctgtggacgtatcatcataaaccgtctaacattaaatctcattgtttaataagccaactgcaattccattttag |
41868606 |
T |
|
| Q |
201 |
caggcttctgttatgctc |
218 |
Q |
| |
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|||||||||||||||||| |
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| T |
41868607 |
caggcttctgttatgctc |
41868624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 34705211 - 34705415
Alignment:
| Q |
1 |
tgcagtgtcgtaacaattgctgccatttcaatgattgagatgcttttcatagagatgacatgtactatatcgcggtgtcatgacaactgttgcaattatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34705211 |
tgcagtgtcgtaacaattgctgccatttcaatgattgagatgcttttcatagagatgacatgtactatatcgcggtgtcatgacaactgttgca------ |
34705304 |
T |
|
| Q |
101 |
gactgcatcggtgataacacatagatctgtggacgtatcatcatagaccgtctaacattgaatctcattgtttaataagccaactgcaattccattttag |
200 |
Q |
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|
||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34705305 |
-------tcggtgataacgcatagatctgtggacgtatcatcatattccgtctaacattaaatctcattgtttaataagccaactgcaattccattttag |
34705397 |
T |
|
| Q |
201 |
caggcttctgttatgctc |
218 |
Q |
| |
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|||||||||||||||||| |
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| T |
34705398 |
caggcttctgttatgctc |
34705415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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