View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0475_high_4 (Length: 396)
Name: NF0475_high_4
Description: NF0475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0475_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 91; Significance: 5e-44; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 206 - 300
Target Start/End: Complemental strand, 10102163 - 10102069
Alignment:
| Q |
206 |
tattctaaggcgataagtataatatttttaaaagcatgtaacttttaatgaaaaacttcatacgataacttgaatcacggtgaatttgtcgaaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10102163 |
tattctaaggcgataagtataatatttttaaaagcatgtaacttttaatgaaaaacttcatacgataacttaaatcacggtgaatttgtcgaaat |
10102069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 155 - 299
Target Start/End: Original strand, 9661591 - 9661733
Alignment:
| Q |
155 |
gtcactataattgatggatggtgaaagtgaaactcctattctgagaagaactattctaaggcgataagtataatatttttaaaagcatgtaacttttaat |
254 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||| |||||| || | |||| | |||||| || ||||| ||||||| ||||||||| |||||||| | |
|
|
| T |
9661591 |
gtcactataattgatggatagtgaaagtgtaactcgtattctaagcataactctcctaaggtgaaaagta--atattttaaaaagcatgcaacttttatt |
9661688 |
T |
|
| Q |
255 |
gaaaaacttcatacgataacttgaatcacggtgaatttgtcgaaa |
299 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9661689 |
gaaaaccttcatacgataacttgaatcacggtgaatttgacgaaa |
9661733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 155 - 291
Target Start/End: Original strand, 10213895 - 10214029
Alignment:
| Q |
155 |
gtcactataattgatggatggtgaaagtgaaactcctattctgagaagaactattctaaggcgataagtataatatttttaaaagcatgtaacttttaat |
254 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||| |||||| | |||||| |||||||| || ||| | ||||||| |||||||||||||||||||| |
|
|
| T |
10213895 |
gtcactattattgatggatggtgaaagtgtaacttttattctaaacagaactcttctaaggtgaaaagca--atattttgaaaagcatgtaacttttaat |
10213992 |
T |
|
| Q |
255 |
gaaaaacttcatacgataacttgaatcacggtgaatt |
291 |
Q |
| |
|
||||| ||||||||||||||||||| ||| ||||||| |
|
|
| T |
10213993 |
gaaaaccttcatacgataacttgaaccacagtgaatt |
10214029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 224 - 292
Target Start/End: Original strand, 12110133 - 12110201
Alignment:
| Q |
224 |
ataatatttttaaaagcatgtaacttttaatgaaaaacttcatacgataacttgaatcacggtgaattt |
292 |
Q |
| |
|
|||||||||| ||||||||| |||||||| |||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
12110133 |
ataatattttaaaaagcatgcaacttttattgaaaaccttcatacagtaacttgaatcacggtgaattt |
12110201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 9659849 - 9659893
Alignment:
| Q |
235 |
aaaagcatgtaacttttaatgaaaaacttcatacgataacttgaa |
279 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9659849 |
aaaagcatgcaacttttaatgaaaatcttcatacgataacttgaa |
9659893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 9676960 - 9677008
Alignment:
| Q |
44 |
tacccctttataagttgtggtatggttcatcttttatctattgtaacaa |
92 |
Q |
| |
|
||||||||||||||| ||||||||||| | ||||||||||||||||||| |
|
|
| T |
9676960 |
tacccctttataagtggtggtatggtttaccttttatctattgtaacaa |
9677008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 10101630 - 10101557
Alignment:
| Q |
226 |
aatatttttaaaagcatgtaacttttaatgaaaaacttcatacgataacttgaatcacggtgaatttgtcgaaat |
300 |
Q |
| |
|
|||| ||| ||||||||| ||||||||||||||| |||||||| ||||| ||||| || ||||||||| |||||| |
|
|
| T |
10101630 |
aatactttaaaaagcatgcaacttttaatgaaaaccttcatacaataacatgaat-acagtgaatttgacgaaat |
10101557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 92
Target Start/End: Original strand, 10213818 - 10213852
Alignment:
| Q |
58 |
ttgtggtatggttcatcttttatctattgtaacaa |
92 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10213818 |
ttgtggtatggtttatcttttatctattgtaacaa |
10213852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 12110075 - 12110116
Alignment:
| Q |
155 |
gtcactataattgatggatggtgaaagtgaaactcctattct |
196 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||| |||||| |
|
|
| T |
12110075 |
gtcactataattgatggatagtgaaagtgtaactcttattct |
12110116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 68 times since January 2019
Visitors: 3464