View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0475_low_1 (Length: 557)

Name: NF0475_low_1
Description: NF0475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0475_low_1
NF0475_low_1
[»] chr1 (9 HSPs)
chr1 (52-547)||(44236238-44236733)
chr1 (81-158)||(23895233-23895310)
chr1 (101-173)||(33339501-33339573)
chr1 (68-110)||(28075670-28075712)
chr1 (68-158)||(29794018-29794108)
chr1 (126-164)||(37841940-37841978)
chr1 (68-158)||(43029497-43029586)
chr1 (93-158)||(46504313-46504378)
chr1 (202-250)||(3597270-3597318)
[»] chr5 (12 HSPs)
chr5 (68-163)||(20982226-20982321)
chr5 (68-158)||(26516182-26516272)
chr5 (74-173)||(35135743-35135842)
chr5 (92-155)||(4991042-4991105)
chr5 (74-145)||(37611300-37611371)
chr5 (74-145)||(37788030-37788101)
chr5 (74-158)||(35963138-35963222)
chr5 (68-163)||(32172537-32172632)
chr5 (91-173)||(37063155-37063237)
chr5 (75-161)||(37618932-37619018)
chr5 (68-120)||(6725121-6725173)
chr5 (191-279)||(19177010-19177098)
[»] chr3 (10 HSPs)
chr3 (81-156)||(2070952-2071027)
chr3 (101-163)||(20349567-20349629)
chr3 (205-286)||(25182940-25183022)
chr3 (68-121)||(20874433-20874486)
chr3 (74-163)||(38462171-38462260)
chr3 (92-164)||(36445640-36445712)
chr3 (83-138)||(28842973-28843028)
chr3 (68-110)||(4534485-4534527)
chr3 (68-158)||(43116524-43116614)
chr3 (74-158)||(21862272-21862356)
[»] chr8 (16 HSPs)
chr8 (87-173)||(28769420-28769506)
chr8 (81-163)||(39392752-39392834)
chr8 (74-163)||(14482092-14482181)
chr8 (68-156)||(27320200-27320288)
chr8 (68-147)||(12972740-12972819)
chr8 (68-167)||(31884478-31884577)
chr8 (85-163)||(6918270-6918348)
chr8 (81-175)||(8799302-8799396)
chr8 (68-158)||(10727081-10727171)
chr8 (68-173)||(4558682-4558787)
chr8 (93-145)||(3645925-3645977)
chr8 (68-111)||(2093169-2093212)
chr8 (68-139)||(29592647-29592718)
chr8 (76-158)||(1117238-1117320)
chr8 (201-279)||(29169896-29169974)
chr8 (202-254)||(14949899-14949951)
[»] scaffold0590 (1 HSPs)
scaffold0590 (69-172)||(1156-1259)
[»] scaffold0275 (1 HSPs)
scaffold0275 (69-172)||(2716-2819)
[»] chr7 (13 HSPs)
chr7 (68-163)||(27481385-27481480)
chr7 (81-163)||(49060437-49060519)
chr7 (68-156)||(2223033-2223120)
chr7 (80-158)||(26935646-26935724)
chr7 (68-157)||(28702641-28702733)
chr7 (96-145)||(27389295-27389344)
chr7 (74-146)||(37497868-37497940)
chr7 (92-138)||(1431424-1431470)
chr7 (68-129)||(5499288-5499349)
chr7 (68-169)||(5628651-5628752)
chr7 (81-118)||(39566324-39566361)
chr7 (92-163)||(30133959-30134028)
chr7 (201-277)||(44808190-44808266)
[»] chr6 (12 HSPs)
chr6 (81-164)||(8349754-8349837)
chr6 (74-158)||(10452456-10452540)
chr6 (203-279)||(32577946-32578022)
chr6 (86-163)||(2514604-2514681)
chr6 (74-163)||(32975868-32975957)
chr6 (68-158)||(2023725-2023815)
chr6 (68-121)||(4247217-4247270)
chr6 (68-149)||(28130030-28130111)
chr6 (68-121)||(30865358-30865411)
chr6 (93-158)||(33068657-33068722)
chr6 (85-173)||(7354105-7354193)
chr6 (81-121)||(21919971-21920011)
[»] chr2 (10 HSPs)
chr2 (81-163)||(38239642-38239724)
chr2 (68-154)||(11393466-11393552)
chr2 (68-154)||(11410127-11410213)
chr2 (81-163)||(35459807-35459889)
chr2 (82-163)||(25609695-25609775)
chr2 (74-163)||(31461328-31461417)
chr2 (199-254)||(10285890-10285945)
chr2 (68-111)||(14316962-14317005)
chr2 (75-163)||(10198569-10198657)
chr2 (81-121)||(43456818-43456858)
[»] chr4 (7 HSPs)
chr4 (68-173)||(7749163-7749268)
chr4 (81-158)||(485978-486055)
chr4 (94-173)||(47970228-47970307)
chr4 (68-163)||(51555958-51556053)
chr4 (68-149)||(41241649-41241730)
chr4 (81-158)||(46796915-46796992)
chr4 (68-120)||(24193469-24193521)
[»] scaffold0110 (1 HSPs)
scaffold0110 (68-143)||(34023-34098)
[»] scaffold0455 (1 HSPs)
scaffold0455 (68-149)||(8617-8698)


Alignment Details
Target: chr1 (Bit Score: 463; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 52 - 547
Target Start/End: Complemental strand, 44236733 - 44236238
Alignment:
Q  52 ctaactggttctccaattggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatg 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44236733 ctaactggttctccaattggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatg 44236634  T
Q  152 ataaaatgaagttgaactatttccctaggttctcctaattcctaaaaaacttatggaaataagctaaaaatagctcaaggatatgtcataagttattttc 251  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44236633 ataaaataaagttgaactgtttccctaggttctcctaattcctaaaaaacttatggaaataagctaaaaatagctcaaggatatgtcataagttattttc 44236534  T
Q  252 atacgatttatcaaacaatctcacaagttattatataaactcaaataaatgaatccnnnnnnncctaactagttctaccaacataaagaaaacacaatca 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||| |    
T  44236533 atacgatttatcaaacaatctcacaagttattatataaactcaaataaatgaatccaaaaaaacctaactagttctaccaacataaagaaaacacaataa 44236434  T
Q  352 acataaatccaaattaagatttaagagagactccaacttaaattaaccccaattgaataatataaagaatttgtttttaccttccattgctaatctcatt 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44236433 acataaatccaaattaagatttaagagagactccaacttaaattaaccccaattgaataatataaagaatttgtttttaccttccattgctaatctcatt 44236334  T
Q  452 tttggcaatgaatccaaaaaagggaccttgatctgcagcttgttcaagcttcttctttttgaaatattcctgcaattccttagccttttgtctctg 547  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44236333 tttggcaatgaatccaaaaaagggaccttgatctgcagcttgttcaagcttcttctttttgaaatattcctgcaattccttagccttttgtctctg 44236238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 23895233 - 23895310
Alignment:
Q  81 ttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaat 158  Q
    ||||||||||||||| ||||||||  ||||||| ||||||  || |||| |||||||| |||||||||| ||||||||    
T  23895233 ttaattaagcacttaaagcataagcccttatcatataagttattatgtataagctatttctataacaaaagataaaat 23895310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 33339573 - 33339501
Alignment:
Q  101 taagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagttgaactattt 173  Q
    |||||| |||||| ||| |||||| |||| |||||||| ||||| |||| |||||||||||||| ||||||||    
T  33339573 taagtggttatcatataggtgtttatgtataagctatttctataccaaaagataaaatgaagttaaactattt 33339501  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 28075670 - 28075712
Alignment:
Q  68 ttggacaaacaagttaattaagcacttatagcataagtgctta 110  Q
    ||||| |||||| |||||||||||||||||||| |||||||||    
T  28075670 ttggataaacaatttaattaagcacttatagcacaagtgctta 28075712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 158
Target Start/End: Complemental strand, 29794108 - 29794018
Alignment:
Q  68 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaat 158  Q
    ||||| |||||  |||||||||| ||||||||||||||| || ||| ||| |||||| |||| | ||||||  | ||||||| ||||||||    
T  29794108 ttggataaacagcttaattaagcgcttatagcataagtgtttttcatatatgtgtttatgtataggctatttttgtaacaaaagataaaat 29794018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 37841940 - 37841978
Alignment:
Q  126 tgtagaagctattcctataacaaatgataaaatgaagtt 164  Q
    |||| |||||||||||||||||||||||||||| |||||    
T  37841940 tgtataagctattcctataacaaatgataaaataaagtt 37841978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 158
Target Start/End: Complemental strand, 43029586 - 43029497
Alignment:
Q  68 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaat 158  Q
    ||||| |||||| |||||||||||||| ||||||||||| |||| | || |||| || |||| || ||||| ||| |||||| ||||||||    
T  43029586 ttggataaacaatttaattaagcacttttagcataagtgattat-atatgagtgcttatgtataacctatttctacaacaaaagataaaat 43029497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 46504378 - 46504313
Alignment:
Q  93 ttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaat 158  Q
    ||||||||||||  ||||||| |||||||||||| || || |||||  ||||||||| ||||||||    
T  46504378 ttatagcataagctcttatcatataagtgtttgtctataaactatttttataacaaaagataaaat 46504313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 3597318 - 3597270
Alignment:
Q  202 ttatggaaataagctaaaaatagctcaaggatatgtcataagttatttt 250  Q
    ||||||||||||||| ||||||||| | ||  |||||||||||||||||    
T  3597318 ttatggaaataagctgaaaatagcttatggccatgtcataagttatttt 3597270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 68 - 163
Target Start/End: Complemental strand, 20982321 - 20982226
Alignment:
Q  68 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 163  Q
    ||||| |||||| || ||||||  |||||||||||||||||||||| ||||||| || |||| |||||||| |||||||||| |||||||| ||||    
T  20982321 ttggataaacaacttcattaagtgcttatagcataagtgcttatcatataagtgcttatgtataagctatttctataacaaaggataaaataaagt 20982226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 68 - 158
Target Start/End: Original strand, 26516182 - 26516272
Alignment:
Q  68 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaat 158  Q
    ||||| |||||| |||||||||| ||||||||||||| |||||||| ||||||| || |||| |||||||| ||| |||||| ||||||||    
T  26516182 ttggataaacaacttaattaagcgcttatagcataagcgcttatcatataagtgcttatgtataagctatttctaaaacaaaagataaaat 26516272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 74 - 173
Target Start/End: Complemental strand, 35135842 - 35135743
Alignment:
Q  74 aaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagttgaactattt 173  Q
    |||||| |||||| | |||| |||||||||||||||| || |||||||||| |||| ||| |||| |||||||||| |||||||| ||||  ||||||||    
T  35135842 aaacaacttaattcaacactcatagcataagtgcttaacatataagtgtttatgtataagatatttctataacaaaagataaaataaagtcaaactattt 35135743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 92 - 155
Target Start/End: Complemental strand, 4991105 - 4991042
Alignment:
Q  92 cttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataa 155  Q
    ||||||||||||| | |||||| ||||||||||||||| ||||||||  ||||||||| |||||    
T  4991105 cttatagcataagcgattatcatataagtgtttgtgtataagctatttttataacaaaagataa 4991042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 37611371 - 37611300
Alignment:
Q  74 aaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataa 145  Q
    |||||| ||||||||||||||||||||||| || || ||| ||||||| || |||| |||||||| ||||||    
T  37611371 aaacaatttaattaagcacttatagcataaatggttgtcatataagtgcttatgtaaaagctatttctataa 37611300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 37788101 - 37788030
Alignment:
Q  74 aaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataa 145  Q
    |||||| ||||||||||||||||||||||| || || ||| ||||||| || |||| |||||||| ||||||    
T  37788101 aaacaatttaattaagcacttatagcataaatggttgtcatataagtgcttatgtaaaagctatttctataa 37788030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 158
Target Start/End: Original strand, 35963138 - 35963222
Alignment:
Q  74 aaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaat 158  Q
    |||||| |||| ||||||||||||||||||| | |||||| ||||||| ||||||| ||  |||| |||||| ||| ||| ||||    
T  35963138 aaacaacttaactaagcacttatagcataagcgattatcaaataagtgcttgtgtataaattatttctataagaaaagatcaaat 35963222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 163
Target Start/End: Original strand, 32172537 - 32172632
Alignment:
Q  68 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 163  Q
    ||||| ||||||  ||||||||| |||| |||||||| |||||||| | ||| | || |||| || ||||| ||| |||||| |||||||||||||    
T  32172537 ttggataaacaacataattaagcgcttacagcataagcgcttatcatacaagagcttatgtataaactatttctacaacaaaagataaaatgaagt 32172632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 173
Target Start/End: Complemental strand, 37063237 - 37063155
Alignment:
Q  91 acttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagttgaactattt 173  Q
    ||||||||||||| ||||| ||| |||| || || |||| || ||||| |||||||||| |||||||| ||||  ||||||||    
T  37063237 acttatagcataaatgcttgtcatataaatgcttatgtataaactatttctataacaaaagataaaataaagtcaaactattt 37063155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 37619018 - 37618932
Alignment:
Q  75 aacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaa 161  Q
    ||||| |||||||||||| || |||||||||| |||||  ||||||| || || | |||||||| |||| | ||| |||||||||||    
T  37619018 aacaacttaattaagcacatacagcataagtgtttatcgtataagtgcttatgcaaaagctatttctattataaaagataaaatgaa 37618932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 6725121 - 6725173
Alignment:
Q  68 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagt 120  Q
    ||||| ||| || |||||||||  |||||||||||||||||||||| ||||||    
T  6725121 ttggataaataatttaattaagtgcttatagcataagtgcttatcatataagt 6725173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 191 - 279
Target Start/End: Original strand, 19177010 - 19177098
Alignment:
Q  191 tcctaaaaaacttatggaaataagctaaaaatagctcaaggatatgtcataagttattttcatacgatttatcaaacaatctcacaagt 279  Q
    ||||||| | |||||||||||||| ||||||||||| | ||| |||||||  ||| |||||||  | | | ||||||||||| ||||||    
T  19177010 tcctaaagatcttatggaaataaggtaaaaatagcttatggacatgtcatcggttgttttcattagctctctcaaacaatctgacaagt 19177098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 81 - 156
Target Start/End: Original strand, 2070952 - 2071027
Alignment:
Q  81 ttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaa 156  Q
    ||||||||||||||||||||||||| |||||||||||||||||  |||| |||||||| || ||||||| ||||||    
T  2070952 ttaattaagcacttatagcataagtacttatcacataagtgttaatgtataagctatttctttaacaaaagataaa 2071027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 20349629 - 20349567
Alignment:
Q  101 taagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 163  Q
    ||||||||||||| ||||||||||||||| |||||||| |  ||||||| |||||||||||||    
T  20349629 taagtgcttatcatataagtgtttgtgtataagctatttcagtaacaaaggataaaatgaagt 20349567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 25183022 - 25182940
Alignment:
Q  205 tggaaataagct-aaaaatagctcaaggatatgtcataagttattttcatacgatttatcaaacaatctcacaagttattata 286  Q
    |||||||| ||| |||||||||| | |||||||||||||||| |||||||| | | | ||||||| ||||||||||| |||||    
T  25183022 tggaaatatgctgaaaaatagcttatggatatgtcataagttgttttcataagctctctcaaacagtctcacaagttcttata 25182940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 20874486 - 20874433
Alignment:
Q  68 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtg 121  Q
    ||||| |||||| ||||||||||||||||||||||| ||| ||||| |||||||    
T  20874486 ttggataaacaacttaattaagcacttatagcataaatgcatatcatataagtg 20874433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 74 - 163
Target Start/End: Original strand, 38462171 - 38462260
Alignment:
Q  74 aaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 163  Q
    ||||||||||||||||| | || |||||||   ||||||| |||||||||| | || |||||||| ||||| |||| |||||||| ||||    
T  38462171 aaacaagttaattaagcgcctaaagcataaacacttatcatataagtgtttatttataagctatttctataccaaaagataaaataaagt 38462260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 164
Target Start/End: Original strand, 36445640 - 36445712
Alignment:
Q  92 cttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagtt 164  Q
    ||||| |||||||||||||||| || ||| ||| |||| |||||||| |||||||||| || ||||| |||||    
T  36445640 cttattgcataagtgcttatcatatgagtttttatgtataagctatttctataacaaaagagaaaataaagtt 36445712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 28843028 - 28842973
Alignment:
Q  83 aattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctatt 138  Q
    ||||||||||||||| |||||| |||||||| ||||||| || |||| ||||||||    
T  28843028 aattaagcacttatatcataagcgcttatcatataagtgcttatgtataagctatt 28842973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 4534527 - 4534485
Alignment:
Q  68 ttggacaaacaagttaattaagcacttatagcataagtgctta 110  Q
    ||||| |||||| |||||||||||||||||| |||||||||||    
T  4534527 ttggataaacaacttaattaagcacttatagtataagtgctta 4534485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 158
Target Start/End: Complemental strand, 43116614 - 43116524
Alignment:
Q  68 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaat 158  Q
    ||||| |||||| |||||| ||   ||||||||||| || |||||| | |||||||| |||  |||||||| |||||||||| ||||||||    
T  43116614 ttggataaacaacttaatttagtgtttatagcataaatgtttatcatacaagtgtttatgtgtaagctatttctataacaaaagataaaat 43116524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 74 - 158
Target Start/End: Complemental strand, 21862356 - 21862272
Alignment:
Q  74 aaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaat 158  Q
    |||||| | |||||||||||||||||||||  | |||||  ||||||| ||| ||| ||||| || |||| ||||| ||||||||    
T  21862356 aaacaactcaattaagcacttatagcataaacgtttatcttataagtgcttgcgtataagctgtttctattacaaaagataaaat 21862272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 87 - 173
Target Start/End: Complemental strand, 28769506 - 28769420
Alignment:
Q  87 aagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagttgaactattt 173  Q
    ||||| ||||||||||||||||||||| |||| || || |||| |||||||||||||||||||  ||||||| ||||  ||||||||    
T  28769506 aagcatttatagcataagtgcttatcatataaatgcttatgtataagctattcctataacaaactataaaattaagtcaaactattt 28769420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 81 - 163
Target Start/End: Complemental strand, 39392834 - 39392752
Alignment:
Q  81 ttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 163  Q
    ||||||||||| ||||||||||||||||||||| |||||||  | |||| || ||||| |||||||||| |||||||| ||||    
T  39392834 ttaattaagcatttatagcataagtgcttatcatataagtggctatgtataaactatttctataacaaaagataaaataaagt 39392752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 74 - 163
Target Start/End: Original strand, 14482092 - 14482181
Alignment:
Q  74 aaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 163  Q
    |||||| |||||||||  |||||||||| ||||||||||| ||||||| || |||| || ||||| |||||||||| |||||||| ||||    
T  14482092 aaacaatttaattaagttcttatagcattagtgcttatcatataagtgcttatgtataaactatttctataacaaaagataaaataaagt 14482181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 68 - 156
Target Start/End: Original strand, 27320200 - 27320288
Alignment:
Q  68 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaa 156  Q
    ||||| |||||| |||||||||| ||||||||||||   ||||||||||||||| ||  ||| |||||||||||||| |||| ||||||    
T  27320200 ttggaaaaacaatttaattaagcgcttatagcataaacacttatcacataagtgcttacgtataagctattcctatagcaaaagataaa 27320288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 68 - 147
Target Start/End: Original strand, 12972740 - 12972819
Alignment:
Q  68 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataaca 147  Q
    |||||||||||| |||||||||| |||||||||||||   |||||| ||||||| || |||| |||||||| | ||||||    
T  12972740 ttggacaaacaacttaattaagcgcttatagcataagcatttatcatataagtgcttatgtataagctatttcaataaca 12972819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 68 - 167
Target Start/End: Original strand, 31884478 - 31884577
Alignment:
Q  68 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagttgaa 167  Q
    ||||| |||||| | |||||||||||||||||||||| |||||||| | |||||  | |||| ||| |||| ||||||||||  ||||||| || |||||    
T  31884478 ttggataaacaactcaattaagcacttatagcataagcgcttatcatacaagtgcatatgtataagttatttctataacaaaatataaaatcaaattgaa 31884577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 163
Target Start/End: Complemental strand, 6918348 - 6918270
Alignment:
Q  85 ttaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 163  Q
    ||||||||||||| | ||||||||||| | |||||||||||| || ||||||||  ||||| ||| |||||||| ||||    
T  6918348 ttaagcacttataacttaagtgcttataatataagtgtttgtatataagctatttatataataaaagataaaataaagt 6918270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 175
Target Start/End: Original strand, 8799302 - 8799396
Alignment:
Q  81 ttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagttgaactatttcc 175  Q
    |||||||||||||||||||| || ||||||||| ||| ||| |||| |  | | |||| |||||||||| |||||||| ||||  ||||||||||    
T  8799302 ttaattaagcacttatagcacaaatgcttatcatatatgtgcttgtatgtatgttatttctataacaaaagataaaataaagtcaaactatttcc 8799396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 158
Target Start/End: Original strand, 10727081 - 10727171
Alignment:
Q  68 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaat 158  Q
    |||||||| ||| ||||||||||| |||||||||||||| | |||| ||||||| || || | |||||||| ||||| |||| ||| ||||    
T  10727081 ttggacaaccaacttaattaagcatttatagcataagtgttcatcatataagtgcttatgcataagctatttctatagcaaaagatgaaat 10727171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 68 - 173
Target Start/End: Original strand, 4558682 - 4558787
Alignment:
Q  68 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagttgaa 167  Q
    ||||| |||||| ||||||| || ||||||||||||  | |||| |  ||||||||| |||| |||||||| |||||| ||| |||||||| ||||| ||    
T  4558682 ttggataaacaacttaattacgcgcttatagcataaacgtttattatgtaagtgtttatgtataagctatttctataataaaagataaaataaagttaaa 4558781  T
Q  168 ctattt 173  Q
     |||||    
T  4558782 ttattt 4558787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 3645977 - 3645925
Alignment:
Q  93 ttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataa 145  Q
    |||||||||||||| |||||| ||||||| ||||||| |||||||| ||||||    
T  3645977 ttatagcataagtgtttatcatataagtgcttgtgtataagctatttctataa 3645925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 2093169 - 2093212
Alignment:
Q  68 ttggacaaacaagttaattaagcacttatagcataagtgcttat 111  Q
    |||||||||||| |||||||||| ||||| ||||||||||||||    
T  2093169 ttggacaaacaacttaattaagcgcttatcgcataagtgcttat 2093212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 139
Target Start/End: Complemental strand, 29592718 - 29592647
Alignment:
Q  68 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattc 139  Q
    ||||| |||||| ||| ||| ||| ||||||||||||| ||||||| ||||||| || |||| |||||||||    
T  29592718 ttggataaacaacttagttatgcatttatagcataagttcttatcatataagtgcttttgtataagctattc 29592647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 76 - 158
Target Start/End: Original strand, 1117238 - 1117320
Alignment:
Q  76 acaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaat 158  Q
    |||| ||||||||| ||||||| ||| ||||||||||| ||||||| || |||  ||| | || ||||||| |||||||||||    
T  1117238 acaacttaattaagtacttatatcattagtgcttatcatataagtgattatgtgtaagttgtttctataacgaatgataaaat 1117320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 29169974 - 29169896
Alignment:
Q  201 cttatggaaataagctaaaaatagctcaaggatatgtcataagttattttcatacgatttatcaaacaatctcacaagt 279  Q
    ||||||||||| |||||||||||||| | |||||||||||| | | |||||||| | | |  |||||||| ||||||||    
T  29169974 cttatggaaatgagctaaaaatagcttatggatatgtcatatgctgttttcataagctctcccaaacaatttcacaagt 29169896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 14949899 - 14949951
Alignment:
Q  202 ttatggaaataagctaaaaatagctcaaggatatgtcataagttattttcata 254  Q
    |||| |||||||||| |||| |||| | ||| |||||||||||||||||||||    
T  14949899 ttatagaaataagctgaaaacagcttatggacatgtcataagttattttcata 14949951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 69 - 172
Target Start/End: Complemental strand, 1259 - 1156
Alignment:
Q  69 tggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagttgaac 168  Q
    |||| |||||| ||||||||| |||||||||||||  |  ||||| ||||||| || |||| |||||||| |||||||||| |||||||| ||||  |||    
T  1259 tggataaacaacttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagtcaaac 1160  T
Q  169 tatt 172  Q
    ||||    
T  1159 tatt 1156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 69 - 172
Target Start/End: Original strand, 2716 - 2819
Alignment:
Q  69 tggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagttgaac 168  Q
    |||| |||||| ||||||||| |||||||||||||  |  ||||| ||||||| || |||| |||||||| |||||||||| |||||||| ||||  |||    
T  2716 tggataaacaacttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagtcaaac 2815  T
Q  169 tatt 172  Q
    ||||    
T  2816 tatt 2819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 163
Target Start/End: Complemental strand, 27481480 - 27481385
Alignment:
Q  68 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 163  Q
    ||||| |||||| ||||||| |  |||||||||||| || |||| | |||||||||| |||| |||||||| |||||||||| ||||||| |||||    
T  27481480 ttggataaacaacttaattaggtgcttatagcataaatgtttattatataagtgtttatgtataagctatttctataacaaaggataaaacgaagt 27481385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 81 - 163
Target Start/End: Original strand, 49060437 - 49060519
Alignment:
Q  81 ttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 163  Q
    |||||||||||||||||| ||||  |||||||| |||||| ||| |||| |||||||| ||||||||||  ||||||| ||||    
T  49060437 ttaattaagcacttatagtataatggcttatcatataagtatttatgtataagctatttctataacaaaaaataaaataaagt 49060519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 156
Target Start/End: Original strand, 2223033 - 2223120
Alignment:
Q  68 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaa 156  Q
    ||||| |||||| ||||||| ||| ||||||||||| | ||||||  |||||||||| |||| |||||||| |||||||||| ||||||    
T  2223033 ttggataaacaatttaattaggcatttatagcataaat-cttatcgtataagtgtttatgtataagctatttctataacaaaagataaa 2223120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 26935724 - 26935646
Alignment:
Q  80 gttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaat 158  Q
    ||||||||||| |||||| |||||| | |||||| ||||||| || |||  ||||||||  ||||||||||||||||||    
T  26935724 gttaattaagcgcttataccataagagattatcatataagtgcttttgtgtaagctatttttataacaaatgataaaat 26935646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 157
Target Start/End: Original strand, 28702641 - 28702733
Alignment:
Q  68 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataag---tgtttgtgtagaagctattcctataacaaatgataaaa 157  Q
    ||||| |||||| ||||||||||||||||||||||||||| || || | |||   | ||| |||| |||||||| |||||||||| |||||||    
T  28702641 ttggataaacaacttaattaagcacttatagcataagtgcgtaccatacaagtattttttatgtataagctatttctataacaaaagataaaa 28702733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 27389295 - 27389344
Alignment:
Q  96 tagcataagtgcttatcacataagtgtttgtgtagaagctattcctataa 145  Q
    |||||||||||||||||| |||||||||| |||| |||||||| ||||||    
T  27389295 tagcataagtgcttatcatataagtgtttatgtataagctatttctataa 27389344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 146
Target Start/End: Complemental strand, 37497940 - 37497868
Alignment:
Q  74 aaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataac 146  Q
    |||||| |||||||||||||||||| ||||| |||||||| |||  || ||||||| ||| |||| |||||||    
T  37497940 aaacaacttaattaagcacttatagtataagcgcttatcatatatatgattgtgtacaagttatttctataac 37497868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 1431470 - 1431424
Alignment:
Q  92 cttatagcataagtgcttatcacataagtgtttgtgtagaagctatt 138  Q
    |||||||||||||||||||||| |||||||||| |||| ||| ||||    
T  1431470 cttatagcataagtgcttatcatataagtgtttatgtataagttatt 1431424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 5499349 - 5499288
Alignment:
Q  68 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgta 129  Q
    ||||| |||||| |||||||| ||||||| ||| |||||||||||| || ||||||| ||||    
T  5499349 ttggataaacaatttaattaaccacttatggcaaaagtgcttatcatatgagtgtttatgta 5499288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 169
Target Start/End: Complemental strand, 5628752 - 5628651
Alignment:
Q  68 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagttgaa 167  Q
    ||||| |||| | |||||||||||| |||| || ||| |||||||| | ||| | || || | ||||||||  ||||||||||||||||||  |||||||    
T  5628752 ttggataaactacttaattaagcacatataacagaagggcttatcatacaagggcttatgcataagctatttttataacaaatgataaaatagagttgaa 5628653  T
Q  168 ct 169  Q
    ||    
T  5628652 ct 5628651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 118
Target Start/End: Complemental strand, 39566361 - 39566324
Alignment:
Q  81 ttaattaagcacttatagcataagtgcttatcacataa 118  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  39566361 ttaattaagcacttataacataagtgcttatcaaataa 39566324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 163
Target Start/End: Original strand, 30133959 - 30134028
Alignment:
Q  92 cttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 163  Q
    ||||||||||||| ||||||||  ||||||||| |||| ||||||||  || |||||| |||||||| ||||    
T  30133959 cttatagcataagcgcttatca--taagtgtttatgtataagctatttttacaacaaaagataaaataaagt 30134028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 201 - 277
Target Start/End: Original strand, 44808190 - 44808266
Alignment:
Q  201 cttatggaaataagctaaaaatagctcaaggatatgtcataagttattttcatacgatttatcaaacaatctcacaa 277  Q
    |||||| ||||||||| |||| || | | ||| ||||||||||||||||||||| | | ||||||||| ||| ||||    
T  44808190 cttatgaaaataagctgaaaacaggttatggacatgtcataagttattttcataaggtctatcaaacagtctgacaa 44808266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 8349837 - 8349754
Alignment:
Q  81 ttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagtt 164  Q
    |||||||||| ||||||||||||   ||||||| ||||||||||||||| || ||||| || ||||||| |||||||| |||||    
T  8349837 ttaattaagcgcttatagcataaccacttatcatataagtgtttgtgtataaactatttctctaacaaaagataaaataaagtt 8349754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 158
Target Start/End: Complemental strand, 10452540 - 10452456
Alignment:
Q  74 aaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaat 158  Q
    |||||| |||||||||| |||||||||||||||  ||||| || |||| || |||| |||||||| ||||||||||  |||||||    
T  10452540 aaacaacttaattaagctcttatagcataagtggctatcatatcagtgcttatgtataagctatttctataacaaaatataaaat 10452456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 279
Target Start/End: Complemental strand, 32578022 - 32577946
Alignment:
Q  203 tatggaaataagctaaaaatagctcaaggatatgtcataagttattttcatacgatttatcaaacaatctcacaagt 279  Q
    |||||||||||||| |||| |||||||||| |||||||||||| |||||||| | | | ||||||||| || |||||    
T  32578022 tatggaaataagctgaaaacagctcaaggacatgtcataagttgttttcataagctctctcaaacaatgtcccaagt 32577946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 2514604 - 2514681
Alignment:
Q  86 taagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 163  Q
    ||||| |||||||||||| |||||||||  |||||| || |||| |||||||| |||||| ||| |||||||| ||||    
T  2514604 taagctcttatagcataaatgcttatcatgtaagtgcttatgtataagctatttctataataaaagataaaataaagt 2514681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 74 - 163
Target Start/End: Original strand, 32975868 - 32975957
Alignment:
Q  74 aaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 163  Q
    |||||| ||||||||||  |||||||||||| |||| ||| |||||||||| |||| ||| |||| || |||||||  ||||||| ||||    
T  32975868 aaacaacttaattaagcgtttatagcataagcgcttctcatataagtgtttatgtataagttatttctgtaacaaaatataaaataaagt 32975957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 158
Target Start/End: Complemental strand, 2023815 - 2023725
Alignment:
Q  68 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaat 158  Q
    ||||| |||||| |||||||||||||||||| ||| |  ||||||| |||||||||  | || ||| |||| ||||| |||| ||||||||    
T  2023815 ttggataaacaacttaattaagcacttatagtataggcacttatcatataagtgttcatatataagttatttctatagcaaaagataaaat 2023725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 4247270 - 4247217
Alignment:
Q  68 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtg 121  Q
    ||||| |||||| |||||||||  |||||||||||||| ||||||| |||||||    
T  4247270 ttggataaacaacttaattaagtgcttatagcataagtacttatcatataagtg 4247217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 28130111 - 28130030
Alignment:
Q  68 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaa 149  Q
    ||||||||||||  ||||||||  ||||||||||||| |  ||||| ||||||  ||||||  |||||||| ||||||||||    
T  28130111 ttggacaaacaatataattaagtgcttatagcataagcgtctatcatataagtacttgtgtttaagctatttctataacaaa 28130030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 30865358 - 30865411
Alignment:
Q  68 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtg 121  Q
    ||||| |||||| ||||||||||| ||||| ||||||| | |||||||||||||    
T  30865358 ttggataaacaacttaattaagcatttataacataagttcctatcacataagtg 30865411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 33068722 - 33068657
Alignment:
Q  93 ttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaat 158  Q
    |||||||||||| |||||||| |||| || || |||| ||| |||| |||||||||| ||||||||    
T  33068722 ttatagcataagcgcttatcaaataaatgcttatgtataagttatttctataacaaaagataaaat 33068657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 7354105 - 7354193
Alignment:
Q  85 ttaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagttgaactattt 173  Q
    |||||| |||||||||||| ||||| ||| | |||| ||  |||| || ||||| |||||||||| |||||||| || | |||||||||    
T  7354105 ttaagcgcttatagcataaatgcttttcatacaagttttcatgtataaactatttctataacaaaagataaaataaaatcgaactattt 7354193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 21919971 - 21920011
Alignment:
Q  81 ttaattaagcacttatagcataagtgcttatcacataagtg 121  Q
    |||||||||| |||||||||||||| ||||||| |||||||    
T  21919971 ttaattaagcgcttatagcataagtacttatcatataagtg 21920011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 81 - 163
Target Start/End: Complemental strand, 38239724 - 38239642
Alignment:
Q  81 ttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 163  Q
    |||||||||||||| |||||||||  || ||||  ||||||||| |||| |||||||| |||||||||| |||||||| ||||    
T  38239724 ttaattaagcacttgtagcataagcactcatcatgtaagtgtttatgtataagctatttctataacaaaagataaaatcaagt 38239642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 154
Target Start/End: Complemental strand, 11393552 - 11393466
Alignment:
Q  68 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgata 154  Q
    ||||| |||||  |||||||||||||||||||| ||||| |||||| ||||||| || | || |||||||| ||||| |||| ||||    
T  11393552 ttggataaacagcttaattaagcacttatagcacaagtgtttatcatataagtgcttatctataagctatttctatatcaaaagata 11393466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 154
Target Start/End: Complemental strand, 11410213 - 11410127
Alignment:
Q  68 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgata 154  Q
    ||||| |||||  |||||||||||||||||||| ||||| |||||| ||||||| || | || |||||||| ||||| |||| ||||    
T  11410213 ttggataaacagcttaattaagcacttatagcacaagtgtttatcatataagtgcttatctataagctatttctatatcaaaagata 11410127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 163
Target Start/End: Original strand, 35459807 - 35459889
Alignment:
Q  81 ttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 163  Q
    |||||| ||| ||||||||||||||| |||||| ||||||| || |||| ||||||||  |||| |||| |||||||| ||||    
T  35459807 ttaattcagctcttatagcataagtgtttatcatataagtgattttgtataagctatttgtataccaaaagataaaataaagt 35459889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 25609695 - 25609775
Alignment:
Q  82 taattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 163  Q
    ||||||||||||| |||||||||  |||| |||||||||| || |||| |||||||| |||||| ||| |||||||| ||||    
T  25609695 taattaagcacttctagcataagctctta-cacataagtgcttatgtataagctatttctataagaaaagataaaataaagt 25609775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 74 - 163
Target Start/End: Original strand, 31461328 - 31461417
Alignment:
Q  74 aaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 163  Q
    |||||| |||||||||||||| ||||||||  |  ||||| ||||||| || | || |||||||| |||||||||| |||||||| ||||    
T  31461328 aaacaacttaattaagcacttctagcataaacgtatatcatataagtggttatatataagctatttctataacaaaagataaaataaagt 31461417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 10285890 - 10285945
Alignment:
Q  199 aacttatggaaataagctaaaaatagctcaaggatatgtcataagttattttcata 254  Q
    |||||||||||||||| | |||| |||| | ||| |||||||||||||||||||||    
T  10285890 aacttatggaaataagttgaaaacagcttatggacatgtcataagttattttcata 10285945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 14317005 - 14316962
Alignment:
Q  68 ttggacaaacaagttaattaagcacttatagcataagtgcttat 111  Q
    ||||| |||||| |||||||||| ||||||||||||||||||||    
T  14317005 ttggataaacaaattaattaagcgcttatagcataagtgcttat 14316962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 75 - 163
Target Start/End: Complemental strand, 10198657 - 10198569
Alignment:
Q  75 aacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 163  Q
    ||||| ||||||| |  |||||||||| ||||||||||| ||||||  || |||| ||||||||| |||||  || |||||||| ||||    
T  10198657 aacaacttaattaggtgcttatagcatgagtgcttatcatataagtacttttgtataagctattcatataagtaaagataaaataaagt 10198569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 43456858 - 43456818
Alignment:
Q  81 ttaattaagcacttatagcataagtgcttatcacataagtg 121  Q
    ||||||||||||||||||||||||   ||||||||||||||    
T  43456858 ttaattaagcacttatagcataagcatttatcacataagtg 43456818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 173
Target Start/End: Complemental strand, 7749268 - 7749163
Alignment:
Q  68 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagttgaa 167  Q
    ||||| |||||| |||| ||||| ||||||||||||||| ||| || |||||||||| |||| | |||||| |||||| ||| || ||||| || | |||    
T  7749268 ttggataaacaacttaactaagctcttatagcataagtgtttaccatataagtgtttatgtatacgctatttctataataaaagagaaaataaaatcgaa 7749169  T
Q  168 ctattt 173  Q
    ||||||    
T  7749168 ctattt 7749163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 485978 - 486055
Alignment:
Q  81 ttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaat 158  Q
    |||||||||| ||||||||||||| |||||||| | ||||| || |||| | |||||| ||| |||||| ||||||||    
T  485978 ttaattaagcgcttatagcataagcgcttatcataaaagtgcttatgtatatgctatttctaaaacaaaagataaaat 486055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 47970228 - 47970307
Alignment:
Q  94 tatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagttgaactattt 173  Q
    |||||| ||||  ||| ||| ||||||| || |||| |||||||| |||||||||| |||||||||||||  ||||||||    
T  47970228 tatagcgtaaggacttgtcatataagtgcttatgtataagctatttctataacaaaagataaaatgaagtcaaactattt 47970307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 163
Target Start/End: Complemental strand, 51556053 - 51555958
Alignment:
Q  68 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 163  Q
    |||| ||||||| ||||| ||||||||||| |||||    |||||| ||||||| || |||| ||||||||  ||||||||| |||||||| ||||    
T  51556053 ttggccaaacaacttaataaagcacttataacataaccatttatcatataagtgcttatgtataagctattattataacaaaagataaaataaagt 51555958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 41241730 - 41241649
Alignment:
Q  68 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaa 149  Q
    ||||||||||||  ||||||||  ||||||||||||| |  ||||| ||||||  ||||||  |||||||| ||||||||||    
T  41241730 ttggacaaacaatataattaagtgcttatagcataagcgtctatcatataagtacttgtgtttaagctatttctataacaaa 41241649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 46796915 - 46796992
Alignment:
Q  81 ttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaat 158  Q
    |||||||| |||||||| ||||||||||||||| ||||||  || || | ||||||||   |||||||| ||||||||    
T  46796915 ttaattaatcacttataacataagtgcttatcatataagttcttatgcataagctattttcataacaaacgataaaat 46796992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 24193469 - 24193521
Alignment:
Q  68 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagt 120  Q
    ||||| |||||| |||||| ||||||||||||||||  |||||||| ||||||    
T  24193469 ttggataaacaacttaattgagcacttatagcataaacgcttatcatataagt 24193521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 34098 - 34023
Alignment:
Q  68 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctat 143  Q
    ||||| |||||| |||||||||  |||||||||||||  || |||| ||||||| || ||||||||||||| ||||    
T  34098 ttggataaacaacttaattaagagcttatagcataagatctgatcatataagtgattatgtagaagctatttctat 34023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 8698 - 8617
Alignment:
Q  68 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaa 149  Q
    ||||||||||||  ||||||||  ||||||||||||| |  ||||| ||||||  ||||||  |||||||| ||||||||||    
T  8698 ttggacaaacaatataattaagtgcttatagcataagcgtctatcatataagtacttgtgtttaagctatttctataacaaa 8617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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