View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0475_low_12 (Length: 251)
Name: NF0475_low_12
Description: NF0475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0475_low_12 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 6e-89; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 21 - 251
Target Start/End: Original strand, 4261282 - 4261526
Alignment:
| Q |
21 |
acatcatcaatcagcatatcagaagtaaatgagattggttgaatgagtcaatctgcacaaactagcaaataaaaaagcatatgatcttttatgatctact |
120 |
Q |
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| T |
4261282 |
acatcagcaatcagcatatcagcagtaaatgagaacagttgaatgagtcaatctgcacaaatgaccaaataaaaaagcatatgatcttttatgatctact |
4261381 |
T |
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| Q |
121 |
cttattctattcttctttgtcatttggtccaaggcatcaaaaaagatgttaagacaatactttatatctgttattagtaaaa--------------acaa |
206 |
Q |
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| T |
4261382 |
cttattctattcttctttgtcatttggtccaaggcatcaaaaaagatgttaagacaatactttatatctgttattagtaaaaacaactaagtaaagacaa |
4261481 |
T |
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| Q |
207 |
caagaatggcctaaacctatgggctattagcaggaaatagactgc |
251 |
Q |
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| T |
4261482 |
caagaatggcctaaacctatgggctattagcaggaaatagactgc |
4261526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 251
Target Start/End: Complemental strand, 4037940 - 4037771
Alignment:
| Q |
97 |
gcatatgatcttttatgatctactcttattctattcttctttgtcatttggtccaaggcatcaaaaaagatgttaag--acaatactttatatctgttat |
194 |
Q |
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| T |
4037940 |
gcatatgatcttttatgatctactcatattctattattgcttgttattttgtcaaaggtaccaaaggagatgttaagacacaatactatatatctgttat |
4037841 |
T |
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| Q |
195 |
tagta------------aaaacaacaagaatggcct-aaacctatgggctattagcaggaaatagactgc |
251 |
Q |
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| T |
4037840 |
tggtaaagacaacaagtaaaacaacaagaatggcctaaaacctatgggctattggcaggaactagactgc |
4037771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 4027516 - 4027475
Alignment:
| Q |
200 |
aaaacaacaagaatggcctaaacctatgggctattagcagga |
241 |
Q |
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| T |
4027516 |
aaaacaacaaaaatggcctaaacctatgggctattagcagga |
4027475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 172
Target Start/End: Complemental strand, 4027602 - 4027537
Alignment:
| Q |
107 |
ttttatgatctactcttattctattcttctttgtcatttggtccaaggcatcaaaaaagatgttaa |
172 |
Q |
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| T |
4027602 |
ttttatgaactactcttattctatttttgtctgtcattttgtccaaggcatcaaagtagatgttaa |
4027537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 4268221 - 4268263
Alignment:
| Q |
120 |
tcttattctattcttctttgtcatttggtccaaggcatcaaaa |
162 |
Q |
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| T |
4268221 |
tcttattctattcttgtttgtcatttgatccaaggcatcaaaa |
4268263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 239
Target Start/End: Original strand, 4268308 - 4268347
Alignment:
| Q |
200 |
aaaacaacaagaatggcctaaacctatgggctattagcag |
239 |
Q |
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| T |
4268308 |
aaaacaacaagaatggcttaaaactatgggctattagcag |
4268347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 34 - 161
Target Start/End: Complemental strand, 24052829 - 24052702
Alignment:
| Q |
34 |
gcatatcagaagtaaatgagattggttgaatgagtcaatctgcacaaactagcaaataaaaaagcatatgatcttttatgatctactcttattctattct |
133 |
Q |
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||||||||||||||||||||| |||||||||||||| ||| |||||||| |||||| ||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
24052829 |
gcatatcagaagtaaatgagaacggttgaatgagtcagtctatacaaactaccaaatagaaatgcatatgatcttttatgatctactcttattctaatct |
24052730 |
T |
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| Q |
134 |
tctttgtcatttggtccaaggcatcaaa |
161 |
Q |
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| T |
24052729 |
tgtttgacatttggtccaaggcatcaaa |
24052702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 34 - 161
Target Start/End: Complemental strand, 24049693 - 24049566
Alignment:
| Q |
34 |
gcatatcagaagtaaatgagattggttgaatgagtcaatctgcacaaactagcaaataaaaaagcatatgatcttttatgatctactcttattctattct |
133 |
Q |
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||||||||||||||||||||| |||||||||||||| ||| |||||||| |||||| ||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
24049693 |
gcatatcagaagtaaatgagaacggttgaatgagtcagtctatacaaactaccaaatagaaatgcatatgatcttttatgatctactcttattctaatct |
24049594 |
T |
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| Q |
134 |
tctttgtcatttggtccaaggcatcaaa |
161 |
Q |
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| T |
24049593 |
tgtttgatatttggtccaaggcatcaaa |
24049566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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