View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0475_low_14 (Length: 241)
Name: NF0475_low_14
Description: NF0475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0475_low_14 |
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| [»] scaffold0279 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 40368490 - 40368721
Alignment:
| Q |
1 |
aaaaacgacttatccgtctagaaactct--atatcttaaactctttcaaattcaagtaaacactcatgaacttatttctttatccaaatacgttcacgaa |
98 |
Q |
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| T |
40368490 |
aaaaacgacttatccgtctataaactctctatatgttaaactcttttaaattcaagtaaacactcatgaacttatttctttatccaaatacgttcacgaa |
40368589 |
T |
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| Q |
99 |
aatgtgggaactcgtgcttatatttcactgcattcagacggcaatgcaacaactcttactcatttgacactacaacatcgtgttactttgaggcaacgac |
198 |
Q |
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| T |
40368590 |
aatgtgggaacccgtgcttatttttcactgcattcagacggcaatgcaacgactcttgctcatttgacactacaccatcatgttacttcgaggcagcgac |
40368689 |
T |
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| Q |
199 |
ctggccttcacactgttgtgtgttcgattcat |
230 |
Q |
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| T |
40368690 |
ctggccttcacactattgtgtgttcgattcat |
40368721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 15218135 - 15218214
Alignment:
| Q |
90 |
gttcacgaaaatgtgggaactcgtgcttatatttcactgcattcagacggcaatgcaacaactcttactcatttgacact |
169 |
Q |
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| T |
15218135 |
gttcacgaagatgtgggaacccttgcttatttttcactacatccaggcggcaatgcagcggcccttgctcatttgacact |
15218214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0279 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0279
Description:
Target: scaffold0279; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 170
Target Start/End: Complemental strand, 18656 - 18546
Alignment:
| Q |
60 |
actcatgaacttatttctttatccaaatacgttcacgaaaatgtgggaactcgtgcttatatttcactgcattcagacggcaatgcaacaactcttactc |
159 |
Q |
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| T |
18656 |
actcatgaactagcttctttacccacacccgttcaagaagatgtgggaactcttgcttatttttcactacatccaggcggcgatgcagcggcccttgctc |
18557 |
T |
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| Q |
160 |
atttgacacta |
170 |
Q |
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| T |
18556 |
atttgacacta |
18546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 52136557 - 52136475
Alignment:
| Q |
89 |
cgttcacgaaaatgtgggaactcgtgcttatatttcactgcattcagacggcaatgcaacaactcttactcatttgacactac |
171 |
Q |
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| T |
52136557 |
cgttcacgaagatgcgggaacccttgcttatttttcactacattcaggcggcgatgcagcggcccttgctcatttgacactac |
52136475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 30335894 - 30335841
Alignment:
| Q |
116 |
ttatatttcactgcattcagacggcaatgcaacaactcttactcatttgacact |
169 |
Q |
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| T |
30335894 |
ttatatttcactacatccagacgacaatgcagcgactcttgctcatttgacact |
30335841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 169
Target Start/End: Complemental strand, 16290987 - 16290907
Alignment:
| Q |
89 |
cgttcacgaaaatgtgggaactcgtgcttatatttcactgcattcagacggcaatgcaacaactcttactcatttgacact |
169 |
Q |
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| T |
16290987 |
cgttcacgaagatgcgggaaccgttgcttatttttcactacatccaggtggcaatgcagcaacccttgctcatttgacact |
16290907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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