View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0475_low_2 (Length: 486)
Name: NF0475_low_2
Description: NF0475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0475_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Original strand, 53351500 - 53351966
Alignment:
| Q |
1 |
ttccagaagctctcttaaccttatacacatgcaacttaaaactatcaatctctactaaacaacttatagacatggtaattgataaactccgtgacttcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
53351500 |
ttccagaagctctcttaaccttatacacatgcaacttaaaacaatcaatctctactaaacaacttatagacatggtaattgataaactccgtggcttcaa |
53351599 |
T |
|
| Q |
101 |
actcatagcacaaattggaaactaacaaatctgtttcagtatgttattgtaaaagacgtggtaaatatgcgagtctcctaagaacaaatacaaattaatg |
200 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
53351600 |
actcatagcacaaattggtaactaacaaatctgtttcagtatgttattgtaaaagacgtggtaaatatgtgagtctcctaagaacaaatacaaattaatg |
53351699 |
T |
|
| Q |
201 |
acatgatcaccaaaataatcaacaaggtataacacaagtggtaaaccctaaattgcacaatgtgtgatctaacgaatatggttgcaattgtagaaggata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53351700 |
acatgatcaccaaaataatcaacaaggtataacacaagtggtaaaccctaaattgcacaatgtgtgatctaacgaatatggttgcaattgtagaaggata |
53351799 |
T |
|
| Q |
301 |
gataaatatttcaaataaaacaaaaagaaaagaagtaaagcatgaagataaaacctcttgagccagcttagaccatttgaattcaccaaagttgttaaag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53351800 |
gataaatatttcaaataaaacaaaaagaaaagaagtaaagcatgaagataaaacctcttgagccagcttagaccatttgaattcaccaaagttgttaaag |
53351899 |
T |
|
| Q |
401 |
aactgaaagactttggttttttcttcttcactaaacggccccttcttcacatctggtcgaaggtgat |
467 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53351900 |
aaccgaaagactttggttttttcttcttcactaaacggccccttcttcacatctggtcgaaggtgat |
53351966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 297 - 467
Target Start/End: Original strand, 26033391 - 26033563
Alignment:
| Q |
297 |
gatagataaatatttcaaataaaacaaaaagaaaagaagtaaagcatgaagataaaa---cctcttgagccagcttagaccatttgaattcaccaaagtt |
393 |
Q |
| |
|
||||||| |||||||||||| ||| ||| ||||||||||||||||||| | ||| |||| | |||||||||||||||||||||||||||| | || |
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| T |
26033391 |
gatagatcaatatttcaaattaaagaaagt-aaaagaagtaaagcatgaataagaaattacctcctcagccagcttagaccatttgaattcaccatactt |
26033489 |
T |
|
| Q |
394 |
gttaaagaactgaaagactttggttttttcttcttcactaaacggccccttcttcacatctggtcgaaggtgat |
467 |
Q |
| |
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||| ||||| ||| ||||| |||| ||||||||||||||| || ||||| |||||||||||| | ||||||| |
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|
| T |
26033490 |
tttatagaacacaaaaacttttgtttcttcttcttcactaaatggaccctttttcacatctggttgcaggtgat |
26033563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 353 - 467
Target Start/End: Complemental strand, 38180807 - 38180693
Alignment:
| Q |
353 |
acctcttgagccagcttagaccatttgaattcaccaaagttgttaaagaactgaaagactttggttttttcttcttcactaaacggccccttcttcacat |
452 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| | || || |||||| ||| ||||| | |||||||||||||||||| || ||||| ||||||| |
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| T |
38180807 |
acctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacat |
38180708 |
T |
|
| Q |
453 |
ctggtcgaaggtgat |
467 |
Q |
| |
|
||||| | ||||||| |
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|
| T |
38180707 |
ctggttgtaggtgat |
38180693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 353 - 467
Target Start/End: Original strand, 38190324 - 38190438
Alignment:
| Q |
353 |
acctcttgagccagcttagaccatttgaattcaccaaagttgttaaagaactgaaagactttggttttttcttcttcactaaacggccccttcttcacat |
452 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| | || || |||||| ||| ||||| | |||||||||||||||||| || ||||| ||||||| |
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|
| T |
38190324 |
acctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacat |
38190423 |
T |
|
| Q |
453 |
ctggtcgaaggtgat |
467 |
Q |
| |
|
||||| | ||||||| |
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|
| T |
38190424 |
ctggttgtaggtgat |
38190438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 353 - 467
Target Start/End: Complemental strand, 38208031 - 38207917
Alignment:
| Q |
353 |
acctcttgagccagcttagaccatttgaattcaccaaagttgttaaagaactgaaagactttggttttttcttcttcactaaacggccccttcttcacat |
452 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| | || || |||||| ||| ||||| | |||||||||||||||||| || ||||| ||||||| |
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|
| T |
38208031 |
acctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacat |
38207932 |
T |
|
| Q |
453 |
ctggtcgaaggtgat |
467 |
Q |
| |
|
||||| | ||||||| |
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|
| T |
38207931 |
ctggttgtaggtgat |
38207917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 353 - 467
Target Start/End: Original strand, 38217549 - 38217663
Alignment:
| Q |
353 |
acctcttgagccagcttagaccatttgaattcaccaaagttgttaaagaactgaaagactttggttttttcttcttcactaaacggccccttcttcacat |
452 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| | || || |||||| ||| ||||| | |||||||||||||||||| || ||||| ||||||| |
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|
| T |
38217549 |
acctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacat |
38217648 |
T |
|
| Q |
453 |
ctggtcgaaggtgat |
467 |
Q |
| |
|
||||| | ||||||| |
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|
| T |
38217649 |
ctggttgtaggtgat |
38217663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 353 - 467
Target Start/End: Complemental strand, 38456167 - 38456053
Alignment:
| Q |
353 |
acctcttgagccagcttagaccatttgaattcaccaaagttgttaaagaactgaaagactttggttttttcttcttcactaaacggccccttcttcacat |
452 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| | || || |||||| ||| ||||| | |||||||||||||||||| || ||||| ||||||| |
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|
| T |
38456167 |
acctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacat |
38456068 |
T |
|
| Q |
453 |
ctggtcgaaggtgat |
467 |
Q |
| |
|
||||| | ||||||| |
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|
| T |
38456067 |
ctggttgtaggtgat |
38456053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 26033331 - 26033391
Alignment:
| Q |
180 |
aagaacaaatacaaattaatgacatgatcaccaaaataatcaacaaggtataacacaagtg |
240 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
26033331 |
aagaacgaatacaaattaatgacatgatcaacaaaataatcaacaaggtaaaacacaagtg |
26033391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 444
Target Start/End: Complemental strand, 38447258 - 38447182
Alignment:
| Q |
368 |
ttagaccatttgaattcaccaaagttgttaaagaactgaaagactttggttttttcttcttcactaaacggcccctt |
444 |
Q |
| |
|
||||||||||||||| ||||||| || ||| |||||||||||||| ||| |||||||| |||||| || ||||| |
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|
| T |
38447258 |
ttagaccatttgaatccaccaaacttcttacgtaactgaaagactttattttcttcttctttactaaatggaccctt |
38447182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 390
Target Start/End: Complemental strand, 38342621 - 38342533
Alignment:
| Q |
309 |
tttcaaataaaacaaaaagaaaag----aagtaaagcatgaagataaa---acctcttgagccagcttagaccatttgaattcaccaaa |
390 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||| | ||| ||||| |||||| ||||||||||||||| |||||||| |
|
|
| T |
38342621 |
tttcaaataaaagaaaaagaaaaggaagaagtaaagcatgaacaaaaatatacctcgagagccatcttagaccatttgaactcaccaaa |
38342533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 390
Target Start/End: Complemental strand, 38446814 - 38446726
Alignment:
| Q |
309 |
tttcaaataaaacaaaaagaaaag----aagtaaagcatgaagataaa---acctcttgagccagcttagaccatttgaattcaccaaa |
390 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||| | ||| ||||| |||||| ||||||||||||||| |||||||| |
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|
| T |
38446814 |
tttcaaataaaagaaaaagaaaaggaagaagtaaagcatgaacaaaaatatacctcgagagccatcttagaccatttgaactcaccaaa |
38446726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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