View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0475_low_4 (Length: 449)
Name: NF0475_low_4
Description: NF0475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0475_low_4 |
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| [»] scaffold0554 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 23149589 - 23149223
Alignment:
| Q |
1 |
aagatctggtagatgttctcataaaatatgaagatggcagcaacaaggaatttttcttgactaaagacaatatcaaggccataatcttggtaagaacaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
23149589 |
aagatctggtagatgttctcataaaatatgaagatggcagcaacaaggaatttttcttgaccaaagacaatatcaaggccataatcttggtaagaacaat |
23149490 |
T |
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| Q |
101 |
aacctaacctcttctaaataaatttaagaaaaacttgattaatacagtagaatttaaatggttatttagaagatgcccttgaattaatttatctcacata |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23149489 |
aacctaacctcttctaaataactttaagaaaaacttgattaatacagtagaatttaaatggttatttagaagatgcccttgaattaatttatctcacata |
23149390 |
T |
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| Q |
201 |
tgagatctttaaactgtgaaatacttccaatgtgtcatattaagtttcctcaaggaaatatatttctttctcaaattatttgtcagtctagaatagtgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23149389 |
tgagatctttaaactgtgaaatacttccaatgtgtcatattaagtttcctcaaggaaatatatttctttctcaaattatttgtcagtctagaatagtgaa |
23149290 |
T |
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| Q |
301 |
caagtttttattacttttattcatttaaattctacatagttcttgtagcattgaatggtgtctctgc |
367 |
Q |
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| T |
23149289 |
caagtttttattacttttattcatttaaattctacgtagttcttgtagcattgaatggtgtctctgc |
23149223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 23024982 - 23024891
Alignment:
| Q |
1 |
aagatctggtagatgttctcataaaatatgaagatggcagcaacaaggaatttttcttgactaaagacaatatcaaggccataatcttggta |
92 |
Q |
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| T |
23024982 |
aagatctggtagatgttctcttaaaatatcaagatggcaataacaaggaatttttcttaactatagacaatatcaaggccataatcatggta |
23024891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 23140971 - 23140884
Alignment:
| Q |
9 |
gtagatgttctcataaaatatgaagatggcagcaacaaggaatttttcttgactaaagacaatatcaaggccataatcttggtaagaa |
96 |
Q |
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|||||||||||||||||||| ||||| || | |||||| |||||||| || ||||||||||||||||||||||||||| ||||||||| |
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| T |
23140971 |
gtagatgttctcataaaatacgaagacggaaacaacaaagaattttttttaactaaagacaatatcaaggccataatcctggtaagaa |
23140884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 23033568 - 23033475
Alignment:
| Q |
1 |
aagatctggtagatgttctcataaaatatgaagatggcagcaacaaggaatttttcttgactaaagacaatatcaaggccataatcttggtaag |
94 |
Q |
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||||||||||||| ||||| |||||||||| ||||| || || | || || ||||| || ||||||||||||||||| |||||||||||||| |
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| T |
23033568 |
aagatctggtagacattctcttaaaatatgaggatggtagtgaccaagatttcttcttaacaaaagacaatatcaaggctataatcttggtaag |
23033475 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 23039753 - 23039660
Alignment:
| Q |
1 |
aagatctggtagatgttctcataaaatatgaagatggcagcaacaaggaatttttcttgactaaagacaatatcaaggccataatcttggtaag |
94 |
Q |
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||||||| ||||| |||||| |||||||||| || || |||||| |||| ||| ||| || ||| |||||||||||||||||||| ||||||| |
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| T |
23039753 |
aagatctcgtagacgttctcttaaaatatgaggacggtagcaaccaggagtttaccttaacaaaaaacaatatcaaggccataatcctggtaag |
23039660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 23146628 - 23146535
Alignment:
| Q |
1 |
aagatctggtagatgttctcataaaatatgaagatggcagcaacaaggaatttttcttgactaaagacaatatcaaggccataatcttggtaag |
94 |
Q |
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|||||||| |||| |||||| |||||||||| || || |||||| |||| ||| ||| || ||| |||||||||||||||||||| ||||||| |
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| T |
23146628 |
aagatctgatagacgttctcttaaaatatgaggacggtagcaaccaggagtttaccttaacaaaaaacaatatcaaggccataatcctggtaag |
23146535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 23017962 - 23017869
Alignment:
| Q |
1 |
aagatctggtagatgttctcataaaatatgaagatggcagcaacaaggaatttttcttgactaaagacaatatcaaggccataatcttggtaag |
94 |
Q |
| |
|
||||||||||||| ||||| |||||||||| ||||| || || | || || | || || |||||||||||||||||||||||||||||||| |
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| T |
23017962 |
aagatctggtagacattctcttaaaatatgaggatggtagtgaccaagatttctcattaacaaaagacaatatcaaggccataatcttggtaag |
23017869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 23036876 - 23036783
Alignment:
| Q |
1 |
aagatctggtagatgttctcataaaatatgaagatggcagcaacaaggaatttttcttgactaaagacaatatcaaggccataatcttggtaag |
94 |
Q |
| |
|
||||||| ||||| |||||| |||| || || |||||||| ||| | || ||| |||||| ||| ||||||||||||||||||| ||||||| |
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| T |
23036876 |
aagatctcgtagacgttctcttaaattacgaggatggcagaaaccaagacctttccttgacaaaaaacaatatcaaggccataataatggtaag |
23036783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 5807 - 5900
Alignment:
| Q |
1 |
aagatctggtagatgttctcataaaatatgaagatggcagcaacaaggaatttttcttgactaaagacaatatcaaggccataatcttggtaag |
94 |
Q |
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||||||| |||| |||||| |||||||||||||||| ||||||||||| |||| ||| || |||||||||||||| ||||| ||| ||||||| |
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| T |
5807 |
aagatctattagacgttctcttaaaatatgaagatggtagcaacaaggagttttccttaacaaaagacaatatcaaagccattatcatggtaag |
5900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 21780643 - 21780550
Alignment:
| Q |
1 |
aagatctggtagatgttctcataaaatatgaagatggcagcaacaaggaatttttcttgactaaagacaatatcaaggccataatcttggtaag |
94 |
Q |
| |
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||||||| ||||| |||||| |||||||||| ||||| |||||| ||| |||| ||| || ||||||||||||||||||||||| ||||||| |
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| T |
21780643 |
aagatctcgtagacgttctcttaaaatatgaggatggtagcaacctggatttttccttaacaaaagacaatatcaaggccataataatggtaag |
21780550 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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