View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0475_low_6 (Length: 336)
Name: NF0475_low_6
Description: NF0475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0475_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 128 - 327
Target Start/End: Original strand, 40274599 - 40274798
Alignment:
| Q |
128 |
ataataaaaatgataatttattactgctatatatgtacgatatatattaatctttcttcttgtcaagagcacctacaagtatatatacttccccgtctat |
227 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
40274599 |
ataataaaaatgataatttattactactatatatgtacaatatatattaatctttcttcttgtcaagagcacctacaagtatatatacttccccatctat |
40274698 |
T |
|
| Q |
228 |
ctatctatctgctccgagcctccaaccctttgttgttggctttggtttgaagctaattaagagacaattttctttccctcatacagtacatcatctctgc |
327 |
Q |
| |
|
|||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
40274699 |
ctatctatctgctctgaggctctaaccctttgttgttggctttggtttgaagctaattaagagacaattttctttccctcatacagtacatcatttctgc |
40274798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 40281643 - 40281689
Alignment:
| Q |
168 |
tatatattaatctttcttcttgtcaagagcacctacaagtatatata |
214 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||| |||||||| |
|
|
| T |
40281643 |
tatatattaatctctcttcttgtcaagagagcctacaattatatata |
40281689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 128
Target Start/End: Original strand, 40563498 - 40563528
Alignment:
| Q |
98 |
aaatatattgagtgtaccataaaatttgcca |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
40563498 |
aaatatattgagtgtaccataaaatttgcca |
40563528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 130
Target Start/End: Original strand, 5215702 - 5215730
Alignment:
| Q |
102 |
atattgagtgtaccataaaatttgccata |
130 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
5215702 |
atattgagtgtaccataaaatttgccata |
5215730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 130
Target Start/End: Original strand, 48977254 - 48977286
Alignment:
| Q |
98 |
aaatatattgagtgtaccataaaatttgccata |
130 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
48977254 |
aaatatattgagtgtaccatagaatttgccata |
48977286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 307 times since January 2019
Visitors: 3469