View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0475_low_8 (Length: 291)
Name: NF0475_low_8
Description: NF0475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0475_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 29 - 284
Target Start/End: Original strand, 5524868 - 5525123
Alignment:
| Q |
29 |
aagtttctcttcaatctaatttagtactctctcatttccattcatacatatattnnnnnnntgacaaacaataccaccatccaccctcaagccaaaacca |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5524868 |
aagtttctcttcaatctaatttagtactctctcatttccattcatacatatattaaaaaaatgacaaacaataccaccatccaccctcaagccaaaacca |
5524967 |
T |
|
| Q |
129 |
ccaccaacggcggtgcagccaccgccgttaaaccctcattcccggcgacaaaagcgcaaatctacggtgcaacccggccaacctaccgtccacaaaccca |
228 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| |
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| T |
5524968 |
ccaccaacggtggtgcagccaccgccgttaaaccctcattcccggcgacaaaagcgcaaatctacggcgccacccgcccaacctaccgtccacaaaccca |
5525067 |
T |
|
| Q |
229 |
ccgttaccgtaacaaccgtaactggtgttgcaccatttgttgctggcttcatctca |
284 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5525068 |
ccgtcaccgtaacaaccgtaactggtgttgcaccatttgttgctggcttcttctca |
5525123 |
T |
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