View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0476_high_10 (Length: 253)
Name: NF0476_high_10
Description: NF0476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0476_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 30 - 196
Target Start/End: Complemental strand, 38744449 - 38744279
Alignment:
| Q |
30 |
tatacctcagatcaaactctatattaccgtgtctttctcgtaaaagcaagggttaacacaaaataaaacgacggtctgttaacaatnnnnnnnnggctat |
129 |
Q |
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| T |
38744449 |
tatacctcagatcaaactctaaattaccgtatctttctcgtaaaagcaagggttaacacaaaataaaacgacggtctgttaacaataaaaaaaaggctat |
38744350 |
T |
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| Q |
130 |
acgt----nnnnnnntaatcagcttttattcaaaactgaattattaatgatataaggtaaatggcttcttc |
196 |
Q |
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| T |
38744349 |
acgtaaaaaaaaaaaaaatcagcttttattcaaaactgaattattaatgatataaggtaaatggcttcttc |
38744279 |
T |
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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 38782022 - 38782067
Alignment:
| Q |
143 |
atcagcttttattcaaaactgaattattaatgatataaggtaaatg |
188 |
Q |
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| T |
38782022 |
atcagcttttattcaaaactgatttattaatgatataaagtaaatg |
38782067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 38788098 - 38788140
Alignment:
| Q |
146 |
agcttttattcaaaactgaattattaatgatataaggtaaatg |
188 |
Q |
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| T |
38788098 |
agcttttattcaaaacggaattattaatgatataaagtaaatg |
38788140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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