View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0476_high_12 (Length: 251)
Name: NF0476_high_12
Description: NF0476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0476_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 5980144 - 5979903
Alignment:
| Q |
1 |
ctgcataataatgatttttt--ctaaatttagcacgcaatcttaatataggcggtccaccgtggacaaataattnnnnnnntcactagacattataatgc |
98 |
Q |
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| T |
5980144 |
ctgcataataatgattttttttctaaatttagcactcaatcttaatataggcggtccaccgtggacaaataattaaaaaaatcactagacattataatgc |
5980045 |
T |
|
| Q |
99 |
ctaacaatgttcgcgtatcttaacggtagaagtttatggtctttagcattcttacggccgagacagtgacctaattggtgtcggttcgaccaaaataata |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5980044 |
ctaacaatgttcgcgtatcttaacggtagaagtttatggtctttagcatttttacggccgagacggtgacctaattggtgtcggttcgaccaaaataata |
5979945 |
T |
|
| Q |
199 |
aaaataaattacttaaattttaaggtacatatattcattcat |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
5979944 |
aaaataaattacttaaattttaaggtacatatattcattcat |
5979903 |
T |
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