View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0476_low_13 (Length: 251)
Name: NF0476_low_13
Description: NF0476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0476_low_13 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 28 - 251
Target Start/End: Original strand, 4144363 - 4144586
Alignment:
| Q |
28 |
cacatatagccaaagtacatgctcctatccccccaacaatggcaatgattaaaacactcttgttacgccctttttcctttttagtaaccgcaactgtaag |
127 |
Q |
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| T |
4144363 |
cacatatagccaaagtacatgctcctatccccccagcaatggcaatgattaaaacactcttgttacgccctttttcctttttagtaaccgcaactgtaag |
4144462 |
T |
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| Q |
128 |
gacccaaattcagattattagagtttaaaaacttaaattattttgatattcaataatataaagaaaatttaccaagttctgctggcacacgaatgaagag |
227 |
Q |
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| T |
4144463 |
gacccaaattcagattattagagtctaaaaacttaaattattttgatattcaataatttaaagaaaatttaccaagttctgccggcacacgaatgaagag |
4144562 |
T |
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| Q |
228 |
atcaactccgccgttaggaaattt |
251 |
Q |
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||||||||||||| |||||||||| |
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| T |
4144563 |
atcaactccgccggtaggaaattt |
4144586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 4152532 - 4152586
Alignment:
| Q |
197 |
taccaagttctgctggcacacgaatgaagagatcaactccgccgttaggaaattt |
251 |
Q |
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|||| |||||||| |||||||||| |||||||||||||||||| ||||||||||| |
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| T |
4152532 |
tacctagttctgccggcacacgaacgaagagatcaactccgccattaggaaattt |
4152586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 4162885 - 4162939
Alignment:
| Q |
197 |
taccaagttctgctggcacacgaatgaagagatcaactccgccgttaggaaattt |
251 |
Q |
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| T |
4162885 |
tacctagttctgctggaacacgaatgaagagatcaactccgctagtaggaaattt |
4162939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 110
Target Start/End: Original strand, 4122860 - 4122923
Alignment:
| Q |
47 |
tgctcctatccccccaacaatggcaatgattaaaacactcttgttacgccctttttccttttta |
110 |
Q |
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| T |
4122860 |
tgctcctatcaccccagcaattacaatgattaaaaaactcttgttgtgtcctttttccttttta |
4122923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 110
Target Start/End: Original strand, 4152230 - 4152293
Alignment:
| Q |
47 |
tgctcctatccccccaacaatggcaatgattaaaacactcttgttacgccctttttccttttta |
110 |
Q |
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|||||||||| ||||| |||| |||||||||||| ||||||||| | ||||||||||||||| |
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| T |
4152230 |
tgctcctatcaccccagcaattacaatgattaaaaaactcttgttgtgtcctttttccttttta |
4152293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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