View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0476_low_16 (Length: 243)

Name: NF0476_low_16
Description: NF0476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0476_low_16
NF0476_low_16
[»] chr8 (11 HSPs)
chr8 (40-243)||(36210226-36210429)
chr8 (48-242)||(36188746-36188940)
chr8 (40-209)||(36197142-36197311)
chr8 (43-217)||(36214838-36215012)
chr8 (48-243)||(36213568-36213769)
chr8 (53-239)||(36208143-36208329)
chr8 (53-239)||(36184959-36185146)
chr8 (97-243)||(36201282-36201426)
chr8 (40-239)||(36202671-36202870)
chr8 (130-239)||(36183542-36183651)
chr8 (123-183)||(36199303-36199363)


Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 40 - 243
Target Start/End: Complemental strand, 36210429 - 36210226
Alignment:
Q  40 cactaagtgtgagagaccaaggagaaaatataatcggattatgcgggccnnnnnnnngagtcgagcattctgcacaaacagctataagaagagcagagaa 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||    
T  36210429 cactaagtgtgagagaccaaggagaaaatataatcggattatgcgggccaaaaaaaagagtcgagcattctgcacaaacagctataagaagagcagagaa 36210330  T
Q  140 agatcattcgttccaaaagattgtcacaacaactgtgacaaagaagccagacattacaaagattcaaacagaaattggcactgcaataggtctcaatttt 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36210329 agatcattcgttccaaaagattgtcacaacaactgtgacaaagaagccagacattacaaagattcaaacagaaattggcaatgcaataggtctcaatttt 36210230  T
Q  240 aatg 243  Q
    ||||    
T  36210229 aatg 36210226  T

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Target: chr8; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 48 - 242
Target Start/End: Complemental strand, 36188940 - 36188746
Alignment:
Q  48 gtgagagaccaaggagaaaatataatcggattatgcgggccnnnnnnnngagtcgagcattctgcacaaacagctataagaagagcagagaaagatcatt 147  Q
    ||||||||| | |||||||||||||||||||||||||||||        ||||||||| |||||||  |||||||||||||| ||| ||||||||||| |    
T  36188940 gtgagagacaatggagaaaatataatcggattatgcgggccaaaaaaaagagtcgagcgttctgcattaacagctataagaacagctgagaaagatcaat 36188841  T
Q  148 cgttccaaaagattgtcacaacaactgtgacaaagaagccagacattacaaagattcaaacagaaattggcactgcaataggtctcaattttaat 242  Q
     ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  36188840 tgttccaaaagattgtcacaacaactgtaacaaagaagccagacattacaaagattcaaacagaaattggctatgcaataggtctcaattttaat 36188746  T

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Target: chr8; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 40 - 209
Target Start/End: Complemental strand, 36197311 - 36197142
Alignment:
Q  40 cactaagtgtgagagaccaaggagaaaatataatcggattatgcgggccnnnnnnnngagtcgagcattctgcacaaacagctataagaagagcagagaa 139  Q
    ||||||| ||||||||||||||||||||||| || |||||||| |||||        ||||| ||||||||||| ||||||||||||||||||| ||||     
T  36197311 cactaagagtgagagaccaaggagaaaatatcattggattatgtgggccagaaaaaagagtcaagcattctgcaaaaacagctataagaagagctgagag 36197212  T
Q  140 agatcattcgttccaaaagattgtcacaacaactgtgacaaagaagccagacattacaaagattcaaaca 209  Q
    |||||| |  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36197211 agatcaattattccaaaagattgtcacagcaactgtgacaaagaagccagacattacaaagattcaaaca 36197142  T

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Target: chr8; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 43 - 217
Target Start/End: Complemental strand, 36215012 - 36214838
Alignment:
Q  43 taagtgtgagagaccaaggagaaaatataatcggattatgcgggccnnnnnnnngagtcgagcattctgcacaaacagctataagaagagcagagaaaga 142  Q
    |||| |||||||||||  || ||| |||||||||||||||||||||         |||| ||||||||| | ||||||||||||||||||| |||| |||    
T  36215012 taagagtgagagaccagagataaagtataatcggattatgcgggccagatgaaaaagtcaagcattctgtaaaaacagctataagaagagctgagagaga 36214913  T
Q  143 tcattcgttccaaaagattgtcacaacaactgtgacaaagaagccagacattacaaagattcaaacagaaattgg 217  Q
    ||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  36214912 tcaattgttccaaaagattgtcacagcaactgtgacaaagaagccagacattacaaagattcaaacacaaattgg 36214838  T

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Target: chr8; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 48 - 243
Target Start/End: Complemental strand, 36213769 - 36213568
Alignment:
Q  48 gtgagagaccaaggagaaaatataatcggattatgcgggccnnnnnnnngagtcgagcattctgcacaaacagctataagaagagcagagaaagatcatt 147  Q
    |||||||||||||||||||||||||||||||||||||| ||        ||||   || ||||| | ||||||||||||||||||| |||| |||||| |    
T  36213769 gtgagagaccaaggagaaaatataatcggattatgcggcccggatgaaagagtaaggctttctgtaaaaacagctataagaagagctgagagagatcaat 36213670  T
Q  148 cgttccaaaagattgtcacaa------caactgtgacaaagaagccagacattacaaagattcaaacagaaattggcactgcaataggtctcaattttaa 241  Q
     |||||||||||||||||||       |||||||||||||||||||||||||||||| |||||||||| |||||||   |||||||||||||||||||||    
T  36213669 tgttccaaaagattgtcacagtcacagcaactgtgacaaagaagccagacattacaatgattcaaacacaaattggtgatgcaataggtctcaattttaa 36213570  T
Q  242 tg 243  Q
    ||    
T  36213569 tg 36213568  T

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Target: chr8; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 239
Target Start/End: Complemental strand, 36208329 - 36208143
Alignment:
Q  53 agaccaaggagaaaatataatcggattatgcgggccnnnnnnnngagtcgagcattctgcacaaacagctataagaagagcagagaaagatcattcgttc 152  Q
    ||||||||||||||||||||||||||||||||||||         |||| |||||||||   ||||| ||| ||||| ||| |||| |||||| | ||||    
T  36208329 agaccaaggagaaaatataatcggattatgcgggccagataaaatagtcaagcattctgttaaaacatctagaagaaaagctgagagagatcaattgttc 36208230  T
Q  153 caaaagattgtcacaacaactgtgacaaagaagccagacattacaaagattcaaacagaaattggcactgcaataggtctcaatttt 239  Q
    ||||||||||||||| |||||||||| ||||| ||||||||||  |||||||||||| | ||||| | |||||||||||| ||||||    
T  36208229 caaaagattgtcacagcaactgtgaccaagaaaccagacattagcaagattcaaacacagattggtattgcaataggtctgaatttt 36208143  T

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Target: chr8; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 239
Target Start/End: Complemental strand, 36185146 - 36184959
Alignment:
Q  53 agaccaaggagaaaatataatcggattatgcggg-ccnnnnnnnngagtcgagcattctgcacaaacagctataagaagagcagagaaagatcattcgtt 151  Q
    |||||||||||||||||||||||||||||||||| ||         |||| |||||||||   ||||| ||| ||||| ||| |||| |||||| | |||    
T  36185146 agaccaaggagaaaatataatcggattatgcggggccagataaaatagtcaagcattctgttaaaacatctagaagaaaagctgagagagatcaattgtt 36185047  T
Q  152 ccaaaagattgtcacaacaactgtgacaaagaagccagacattacaaagattcaaacagaaattggcactgcaataggtctcaatttt 239  Q
    |||||||||||||||| |||||||||| ||||| ||||||||||  |||||||||||| | ||||| | |||||||||||| ||||||    
T  36185046 ccaaaagattgtcacagcaactgtgaccaagaaaccagacattagcaagattcaaacacagattggtattgcaataggtctgaatttt 36184959  T

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Target: chr8; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 97 - 243
Target Start/End: Complemental strand, 36201426 - 36201282
Alignment:
Q  97 gagtcgagcattctgcacaaacagctataagaagagcagagaaagatcattcgttccaaaagattgtcacaacaactgtgacaaagaagccagacattac 196  Q
    ||||| || |||||| | || |||||||||||||||| ||||  ||||| | ||||||||||| ||||||| |||||||||| ||||||||||||||||     
T  36201426 gagtcaagtattctgtaaaagcagctataagaagagctgaga--gatcaattgttccaaaagactgtcacagcaactgtgaccaagaagccagacattaa 36201329  T
Q  197 aaagattcaaacagaaattggcactgcaataggtctcaattttaatg 243  Q
     |||||||||||| | |||||   |||||||||||||||||||||||    
T  36201328 taagattcaaacacagattggtgatgcaataggtctcaattttaatg 36201282  T

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Target: chr8; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 239
Target Start/End: Complemental strand, 36202870 - 36202671
Alignment:
Q  40 cactaagtgtgagagaccaaggagaaaatataatcggattatgcgggccnnnnnnnngagtcgagcattctg-cacaaacagctataagaagagcagaga 138  Q
    ||||||| |||||||||||||||||||| ||||| ||||||||||||||        ||||| ||  ||||| ||||| | | ||| |||||| | ||||    
T  36202870 cactaagagtgagagaccaaggagaaaacataattggattatgcgggccagatgaaagagtcaaggcttctgtcacaacc-gttatgagaagatctgaga 36202772  T
Q  139 aagatcattcgttccaaaagattgtcacaacaactgtgacaaagaagccagacattacaaagattcaaacagaaattggcactgcaataggtctcaattt 238  Q
     |||||| | |||| |||||||||||||| |||| ||||| |||||||||||||||||| ||||||||||| |||||||   ||||||| |||| |||||    
T  36202771 gagatcaattgttcgaaaagattgtcacagcaaccgtgacgaagaagccagacattacacagattcaaacacaaattggtgatgcaatatgtctgaattt 36202672  T

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Target: chr8; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 239
Target Start/End: Complemental strand, 36183651 - 36183542
Alignment:
Q  130 gagcagagaaagatcattcgttccaaaagattgtcacaacaactgtgacaaagaagccagacattacaaagattcaaacagaaattggcactgcaatagg 229  Q
    |||| |||| |||||| | |||||||||||| |||  | ||||||||||| ||||||  ||||||||| |||||| |||| ||||||| | |||||||||    
T  36183651 gagctgagagagatcaattgttccaaaagatcgtcttagcaactgtgacatagaagcttgacattacatagattcgaacacaaattggtattgcaatagg 36183552  T
Q  230 tctcaatttt 239  Q
    ||||||||||    
T  36183551 tctcaatttt 36183542  T

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Target: chr8; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 36199363 - 36199303
Alignment:
Q  123 ataagaagagcagagaaagatcattcgttccaaaagattgtcacaacaactgtgacaaaga 183  Q
    ||||||||||| |||| |||||| | |||||||||||||||||||||||||||||||||||    
T  36199363 ataagaagagccgagagagatcaattgttccaaaagattgtcacaacaactgtgacaaaga 36199303  T

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