View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0476_low_17 (Length: 241)
Name: NF0476_low_17
Description: NF0476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0476_low_17 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 29 - 241
Target Start/End: Original strand, 38755764 - 38755976
Alignment:
| Q |
29 |
cttctaatgtttaacatgtacaaacactaatttttaccctcgtcaatttctcacttctcaccaaacaatccctaatttctcttctttccactctcaatcc |
128 |
Q |
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| T |
38755764 |
cttctaatgtttaacatgaacaaacactaatttttaccctcgtcaatttctcacttctcaccaaacaatccctaatttctcttctttccactctcaatcc |
38755863 |
T |
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| Q |
129 |
ttgacttgataaccagcatcgaaagtatttctattgtatgggtttttcaaaatcactcagacaaaagccctcaatccctaacatttaagttactaaaagt |
228 |
Q |
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| T |
38755864 |
ttgacttgataaccagcatcgaaagtatttctattgtatgggtttttcaaaatcactcagtcaaaagccctcaatccttaacatttaagttactaaaagt |
38755963 |
T |
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| Q |
229 |
aaggatatgaaat |
241 |
Q |
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|||||||||||| |
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| T |
38755964 |
gaggatatgaaat |
38755976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 83 - 215
Target Start/End: Complemental strand, 46609411 - 46609274
Alignment:
| Q |
83 |
ttctcaccaaacaatccctaatttctcttctttccactctcaatccttgacttgataaccagcatcgaaagtatttctattgtatgggtttttcaaaatc |
182 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||| ||||||||||||||||| ||||| |
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| T |
46609411 |
ttctcaccaaacgatccctactttctcttctttccactctcaatccttcacttgataatcagtatcgaaagtatttatattgtatgggtttttcgaaatc |
46609312 |
T |
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| Q |
183 |
actc-----agacaaaagccctcaatccctaacattta |
215 |
Q |
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| T |
46609311 |
actcactcaaaactaaagccctcaatccttaacattta |
46609274 |
T |
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