View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0476_low_2 (Length: 570)
Name: NF0476_low_2
Description: NF0476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0476_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 538; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 1 - 566
Target Start/End: Original strand, 48062849 - 48063413
Alignment:
| Q |
1 |
atttctggtagtcactgtttgtgaggatatgacggttcattgcacatccatatggaaaatttgcccttgtttgtttaataacaactattgctccttccaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48062849 |
atttctggtagtcactgtttgtgaggatatgacggttcatcgcacatccatatggaaaatttgcccttgtttgtttaataacaactgttgctccttccaa |
48062948 |
T |
|
| Q |
101 |
cactgtttcatttggatgagttacctggaatctcaccctgctcttacgtacctgtaggttataaatcagattaacttaagcattttttctgctatacatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
48062949 |
cactgtttcatttggatgagttacctggaatctcaccctgctcttacgtacctgtaggttataaatcagat-aacttaagcattttttctgctatacatc |
48063047 |
T |
|
| Q |
201 |
tactactgattttcattatgcaatttggtatgctattgagtttgttcctcttaatgacaacatgcttgactattggtctgcgaggccgagagtcgtgatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48063048 |
tactactgattttcattatgcaatttggtatgctattgagtttgttcctcttaatgacaacatgcttgactattggtctgcgaggccgagagtcgtgatg |
48063147 |
T |
|
| Q |
301 |
gtagtactagtaatacaaaaataaaagcaacgattcatcccctggtgcaaagcacaggtgtctatgtgaaaacaatataagcattagcttaccctctcaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48063148 |
gtagtactagtaatacaaaaataaaagcaacgattcatcccctggtgcaaagcacaggtatctatgtgaaaacaatataagcattagcttaccctctcaa |
48063247 |
T |
|
| Q |
401 |
tgctgctatcttggtgtgacctccattgctctctggtgaatggttgtaaggagacactatgaacccataattccacaattggattctcgctctgcatgca |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
48063248 |
tgctgctatcttggtgtgacctccattgctctctggtgaatggttgtaaggagacactatgaacccataattccacaattggattctcactctgcatgca |
48063347 |
T |
|
| Q |
501 |
agttgatttcagtcaacaaatatctaagcacataaaaacaagtactttaaccatttcatctcactc |
566 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
48063348 |
agttgatttcagtcaacaaatatctaagcacataaaaacaagtactttaaccatttcatttcactc |
48063413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 5 - 168
Target Start/End: Original strand, 48106488 - 48106651
Alignment:
| Q |
5 |
ctggtagtcactgtttgtgaggatatgacggttcattgcacatccatatggaaaatttgcccttgtttgtttaataacaactattgctccttccaacact |
104 |
Q |
| |
|
|||||||||| |||||||||| |||||| ||||||| |||||||| |||| |||| |||| |||||||| | || |||||| ||||||||||||| || |
|
|
| T |
48106488 |
ctggtagtcaatgtttgtgagtatatgatggttcatcccacatccaaatgggaaatctgcctttgtttgtgttatcacaactgttgctccttccaatgct |
48106587 |
T |
|
| Q |
105 |
gtttcatttggatgagttacctggaatctcaccctgctcttacgtacctgtaggttataaatca |
168 |
Q |
| |
|
||||||||| || | |||| ||||||||||| || ||||||||||||| | ||||||||||| |
|
|
| T |
48106588 |
gtttcatttacattacttacatggaatctcactctactcttacgtacctacaagttataaatca |
48106651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 48066938 - 48067100
Alignment:
| Q |
1 |
atttctggtagtcactgtttgtgaggatatgacggttcattgcacatccatatggaaaatttgcccttgtttgtttaataacaactattgctccttccaa |
100 |
Q |
| |
|
|||||||||| ||| ||||||||||||| ||| |||||| ||||||| |||| |||| |||| |||||||||| || ||||| ||||||||||||| |
|
|
| T |
48066938 |
atttctggtactcaatgtttgtgaggatgtgatagttcatcccacatccgaatgggaaatctgcctttgtttgtttgatgacaaccgttgctccttccaa |
48067037 |
T |
|
| Q |
101 |
cactgtttcatttggatgagttacctggaatctcaccctgctcttacgtacctgtaggttata |
163 |
Q |
| |
|
|||||| ||| ||||| |||| |||||| ||||| |||||||||||||||| ||| |||| |
|
|
| T |
48067038 |
tgatgtttcgtttagatgatttacttggaatgtcaccttgctcttacgtacctgcaggatata |
48067100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 4 - 168
Target Start/End: Original strand, 48099886 - 48100050
Alignment:
| Q |
4 |
tctggtagtcactgtttgtgaggatatgacggttcattgcacatccatatggaaaatttgcccttgtttgtttaataacaactattgctccttccaacac |
103 |
Q |
| |
|
||||||| ||| |||||| ||||| | | ||||||| |||||||| ||| ||||||||| |||||||||| || |||| | ||||||||||| | |
|
|
| T |
48099886 |
tctggtactcaaagtttgtaaggatgtaatggttcatcccacatccaagtgggaaatttgcctttgtttgtttgatgacaattgatgctccttccatttc |
48099985 |
T |
|
| Q |
104 |
tgtttcatttggatgagttacctggaatctcaccctgctcttacgtacctgtaggttataaatca |
168 |
Q |
| |
|
||||| ||| |||||||||| |||||||||||| ||||||| |||||||| || |||||||||| |
|
|
| T |
48099986 |
tgttttgtttagatgagttacatggaatctcaccttgctcttgcgtacctgcagtttataaatca |
48100050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 385 - 497
Target Start/End: Original strand, 48100243 - 48100355
Alignment:
| Q |
385 |
tagcttaccctctcaatgctgctatcttggtgtgacctccattgctctctggtgaatggttgtaaggagacactatgaacccataattccacaattggat |
484 |
Q |
| |
|
|||||||||||||||| ||| ||||| ||||| |||||||| | ||||||||||||||||||||||||||| | |||||| ||||||| |||||| |
|
|
| T |
48100243 |
tagcttaccctctcaacgctatcgtcttgctgtgatctccattgtttcttggtgaatggttgtaaggagacactatcagcccatagttccacagttggat |
48100342 |
T |
|
| Q |
485 |
tctcgctctgcat |
497 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
48100343 |
tctcgcactgcat |
48100355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 383 - 477
Target Start/End: Original strand, 48067193 - 48067287
Alignment:
| Q |
383 |
attagcttaccctctcaatgctgctatcttggtgtgacctccattgctctctggtgaatggttgtaaggagacactatgaacccataattccaca |
477 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||| | || ||||||||||||| |||||||||| | ||||||||||||| |
|
|
| T |
48067193 |
attagcttaccctctcaatgctgtcggcttggtgtgatctccattgtgttttgttgaatggttgtaaagagacactatcagtccataattccaca |
48067287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 477
Target Start/End: Original strand, 48106909 - 48107005
Alignment:
| Q |
381 |
gcattagcttaccctctcaatgctgctatcttggtgtgacctccattgctctctggtgaatggttgtaaggagacactatgaacccataattccaca |
477 |
Q |
| |
|
||||||||||||||| ||||| || | ||||||||||| ||||||| || | | || |||||||| ||||| ||||||| | |||||| ||||||| |
|
|
| T |
48106909 |
gcattagcttaccctttcaatattgttgtcttggtgtgatctccattcctttttagtaaatggttgcaaggacacactatcagcccatatttccaca |
48107005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University