View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0476_low_3 (Length: 506)
Name: NF0476_low_3
Description: NF0476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0476_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 181 - 487
Target Start/End: Complemental strand, 38744150 - 38743845
Alignment:
| Q |
181 |
tcacatacttccgctagaaaaaactatcaaatacttggtcattggcgaaaattcagta-gaatcgtaacaaatctttttcatattttattgaagaacaga |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38744150 |
tcacatacttccgctagaaaaaactatcaaatacttggtcattagcgaaaattcagtaagaatcgtaacaaatctttttcatattttattgaagaacaga |
38744051 |
T |
|
| Q |
280 |
tctttttcatataacaaaccaaatattttttcaaaaaatataacaaccaaagagaaaatctcaaccgctcaatcacaataacaatgtccaagttaccttc |
379 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
38744050 |
tctttttcatataacaa-ccaaagattttttcaaaaaatataacaaccaaagagaaaatctcaaccgttcaatcacaataacaatgtacaagttaccttc |
38743952 |
T |
|
| Q |
380 |
tnnnnnnntctaaaccgtctaaaatatctgaatcttaaacaaacaccccatcacctacactatataataacacacggtagtgtgtttacttcacttcatt |
479 |
Q |
| |
|
| ||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38743951 |
taaaaaaatctaaaccgtctaaaatatctgaatctcaaacaaacaccccatcaactac-ctatataataatacacggtagtgtgtttacttcacttcata |
38743853 |
T |
|
| Q |
480 |
ctcaaaaa |
487 |
Q |
| |
|
||||||| |
|
|
| T |
38743852 |
ttcaaaaa |
38743845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 249 - 495
Target Start/End: Original strand, 38788333 - 38788575
Alignment:
| Q |
249 |
aaatctttttcatattttatt----gaagaacagatctttttcatataacaaaccaaatattttttcaaaaaatataacaaccaaagagaaaatctcaac |
344 |
Q |
| |
|
||||||||||||||||||||| |||| ||| |||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38788333 |
aaatctttttcatattttattttttgaagtacatatctttttcatataacaa-ccaaagattttgtcaaaaaatataacaaccaaagagaaaatctcaac |
38788431 |
T |
|
| Q |
345 |
cgctcaatcacaataacaatgtccaagttaccttctnnnnnnntctaaaccgtctaaaatatctgaatcttaaacaaacaccccatcacctacactatat |
444 |
Q |
| |
|
|| || |||||||| ||||||||||||| ||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
38788432 |
cgtctaa-------aacaatgtacaagttaccttctaaaaaaatctaaacaatctaaaatatctgaatctaaaacaaataccccatcacctacactatat |
38788524 |
T |
|
| Q |
445 |
aataacacacggtagtgtgtttacttcacttcattctcaaaaacggttcat |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38788525 |
aataacacacggtagtgtgtttacttcacttcattctcaaaaacggttcat |
38788575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 38744333 - 38744279
Alignment:
| Q |
5 |
aatcagcttttattcaaaactgaattattaatgatataaggtaaatggcttcttc |
59 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38744333 |
aatcagcttttattcaaaactgaattattaatgatataaggtaaatggcttcttc |
38744279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 38788233 - 38788314
Alignment:
| Q |
181 |
tcacatacttccgctagaaaaaactatcaaatacttggtcattggcgaaaattcagt-agaatcgtaacaaatctttttcatatt |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||| |||||| |||||||||||||||||||| |
|
|
| T |
38788233 |
tcacatacttccgctagaaaaaactatcaaatacttggtcattagcg---atttagtaagaatcataacaaatctttttcatatt |
38788314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 450
Target Start/End: Original strand, 38782192 - 38782364
Alignment:
| Q |
279 |
atctttttcatataacaaaccaaatattttttcaaaaaatataacaaccaaagagaaaatctcaaccgctcaatcaca---ataacaatgtccaagttac |
375 |
Q |
| |
|
|||||||||||||||||||| ||| || || ||||||||||||| ||||||||| |||||||| ||| |||| ||| |||| ||| | |||||||| |
|
|
| T |
38782192 |
atctttttcatataacaaac-aaagatcttgtcaaaaaatataagaaccaaagaacaaatctcagccgtgcaattacactgataataat-tacaagttac |
38782289 |
T |
|
| Q |
376 |
cttctnnnnnnntctaaaccgtctaaaatatctgaatcttaaacaaacaccccatcacctacactatataataac |
450 |
Q |
| |
|
|||| |||||||||||||||||||| ||||| ||||||| | | ||| |||||||||||||||||| |
|
|
| T |
38782290 |
cttccagaaaaatctaaaccgtctaaaatatcccaatctcaaacaaatatacaatcgcctacactatataataac |
38782364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 38782022 - 38782067
Alignment:
| Q |
6 |
atcagcttttattcaaaactgaattattaatgatataaggtaaatg |
51 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
38782022 |
atcagcttttattcaaaactgatttattaatgatataaagtaaatg |
38782067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 38788098 - 38788140
Alignment:
| Q |
9 |
agcttttattcaaaactgaattattaatgatataaggtaaatg |
51 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
38788098 |
agcttttattcaaaacggaattattaatgatataaagtaaatg |
38788140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 169
Target Start/End: Complemental strand, 38744202 - 38744174
Alignment:
| Q |
141 |
cgaacttttacatagtgtataatctgtgg |
169 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
38744202 |
cgaacttttacatagtgtataatctgtgg |
38744174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University