View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0476_low_4 (Length: 478)
Name: NF0476_low_4
Description: NF0476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0476_low_4 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 445; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Original strand, 48106080 - 48106557
Alignment:
| Q |
1 |
atactcattcataaacaatgttgtttctggatcaagctcatgagcttttaaatagtataattcagatgcatttttacctagtttgtcctcataaaagtga |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
48106080 |
atactcattcataaacaattttgtttctggatcaagctcatgagcttttaaatagtataattcagatgcattttcacctagtttgtcctcataaaagtga |
48106179 |
T |
|
| Q |
101 |
aaatggacattttcattcaccacatcccatgcaatcaattctcctttataccttttaacaacagattcgattcnnnnnnncgcggctttgcgcaattcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
48106180 |
aaatggacattttcattcaccacatcccatgcaatcaattctcctttataccttttaacaacagattcgattctttttttcgcggctttgcgcaattcat |
48106279 |
T |
|
| Q |
201 |
cgggcgataaatacttaacccattcaggttgatatttttcatcgtcccagaaaatgttatgacctctgacagaaattccattatctttagcaaattctaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48106280 |
cgggcgataaatacttaacccattcaggttgatatttttcatcgtcccagaaaatgttatgacctctgacagaaattccattatctttagcaaattctaa |
48106379 |
T |
|
| Q |
301 |
cattgtatctgagatagtgtagttttcttggcctggaattatttctgtactataccatttcatttcattggtgaaagttgtgtatttgaatcttgacaca |
400 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48106380 |
cattgcatctgagatagtgtagttttcttggcctggaattatttctgtactataccatttcatttcattggtgaaagttgtgtatttgaatcttgacaca |
48106479 |
T |
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| Q |
401 |
aaccattcctggtagtcaatgtttgtgagtatatgatggttcatcccacatccaaatgggaaatctgcctttgtttgt |
478 |
Q |
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| T |
48106480 |
aaccattcctggtagtcaatgtttgtgagtatatgatggttcatcccacatccaaatgggaaatctgcctttgtttgt |
48106557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 51 - 478
Target Start/End: Original strand, 48062495 - 48062922
Alignment:
| Q |
51 |
aatagtataattcagatgcatttttacctagtttgtcctcataaaagtgaaaatggacattttcattcaccacatcccatgcaatcaattctcctttata |
150 |
Q |
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||||||||| | |||| |||||||| || || ||||||||| ||||||| || |||||||| ||||| ||||| |||||||||||||||| ||||||||| |
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| T |
48062495 |
aatagtatactgcagaggcatttttgccgaggttgtcctcaaaaaagtggaagtggacattctcatttaccacgtcccatgcaatcaattgtcctttata |
48062594 |
T |
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| Q |
151 |
ccttttaacaacagattcgattcnnnnnnncgcggctttgcgcaattcatcgggcgataaatacttaacccattcaggttgatatttttcatcgtcccag |
250 |
Q |
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|||| || || |||| |||| || |||| || |||||||| || || | || | |||||||||||||| | ||||| |||||| |
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| T |
48062595 |
ccttgagaccacggatttcattctttttgcagctgcttctcgtaattcatcaggagacagggacaaatcccattcaggttgacgtctttcactgtcccac |
48062694 |
T |
|
| Q |
251 |
aaaatgttatgacctctgacagaaattccattatctttagcaaattctaacattgtatctgagatagtgtagttttcttggcctggaattatttctgtac |
350 |
Q |
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| T |
48062695 |
aaaatgttatgacctctgacagatatgccattttccttagcaaatttcagcatggcatctgggatagtatagttttcatggccttggattttctctgtac |
48062794 |
T |
|
| Q |
351 |
tataccatttcatttcattggtgaaagttgtgtatttgaatcttgacacaaaccattcctggtagtcaatgtttgtgagtatatgatggttcatcccaca |
450 |
Q |
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||||||| ||||| || || ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| |||||||| |||| |
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| T |
48062795 |
tataccacttcatctcgttagtgaaagttgtgtatttgaatcttgacacaaaccatttctggtagtcactgtttgtgaggatatgacggttcatcgcaca |
48062894 |
T |
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| Q |
451 |
tccaaatgggaaatctgcctttgtttgt |
478 |
Q |
| |
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|||| |||| |||| |||| |||||||| |
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| T |
48062895 |
tccatatggaaaatttgcccttgtttgt |
48062922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 237 - 478
Target Start/End: Original strand, 48066770 - 48067011
Alignment:
| Q |
237 |
tttcatcgtcccagaaaatgttatgacctctgacagaaattccattatctttagcaaattctaacattgtatctgagatagtgtagttttcttggcctgg |
336 |
Q |
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||||||||||||| |||||| |||||||||||||||||| ||||| ||||| ||||||| | ||| | ||| | ||||| |||||||| |||||| | |
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| T |
48066770 |
tttcatcgtcccacaaaatggcatgacctctgacagaaatgccattttctttggcaaatttcagcatggcatcaggaatagtatagttttcctggccttg |
48066869 |
T |
|
| Q |
337 |
aattatttctgtactataccatttcatttcattggtgaaagttgtgtatttgaatcttgacacaaaccattcctggtagtcaatgtttgtgagtatatga |
436 |
Q |
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|||| | |||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||| || ||| |
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| T |
48066870 |
aattttctctgtactataccacttcatctcattagtgaaagttgtgtacttgaatcttgacacaaaccatttctggtactcaatgtttgtgaggatgtga |
48066969 |
T |
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| Q |
437 |
tggttcatcccacatccaaatgggaaatctgcctttgtttgt |
478 |
Q |
| |
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| T |
48066970 |
tagttcatcccacatccgaatgggaaatctgcctttgtttgt |
48067011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 80 - 478
Target Start/End: Original strand, 48099558 - 48099956
Alignment:
| Q |
80 |
agtttgtcctcataaaagtgaaaatggacattttcattcaccacatcccatgcaatcaattctcctttataccttttaacaacagattcgattcnnnnnn |
179 |
Q |
| |
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||||||| |||| ||||||| | |||||||| |||||||| || ||||||||||||| || |||| |||||||| ||| |||||| |||| |
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| T |
48099558 |
agtttgttctcaaaaaagtggtagtggacattctcattcacaacgtcccatgcaatcagttgtcctctataccttgaaaccacagatcttattctttttg |
48099657 |
T |
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| Q |
180 |
ncgcggctttgcgcaattcatcgggcgataaatacttaacccattcaggttgatatttttcatcgtcccagaaaatgttatgacctctgacagaaattcc |
279 |
Q |
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|| ||||| || ||||| || || |||| |||||||||||| ||| ||| | |||||||||||||||||| | ||||||||||||||||||| || |
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| T |
48099658 |
cagccgcttttcgtaattcttcaggagataggaacttaacccatttaggctgaaaagtttcatcgtcccagaaaacggtatgacctctgacagaaatgcc |
48099757 |
T |
|
| Q |
280 |
attatctttagcaaattctaacattgtatctgagatagtgtagttttcttggcctggaattatttctgtactataccatttcatttcattggtgaaagtt |
379 |
Q |
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||| ||||| || |||| | ||| | ||||| |||||| |||||||| |||||| ||| | | |||||||||||||| ||||| ||||| || |||| | |
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| T |
48099758 |
attttctttggcgaatttcatcatggcatctgggatagtatagttttcctggccttgaaatctctctgtactataccacttcatctcattagtaaaagct |
48099857 |
T |
|
| Q |
380 |
gtgtatttgaatcttgacacaaaccattcctggtagtcaatgtttgtgagtatatgatggttcatcccacatccaaatgggaaatctgcctttgtttgt |
478 |
Q |
| |
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||||| ||||||||||||||||||||| |||||| |||| |||||| || || | |||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
48099858 |
gtgtacttgaatcttgacacaaaccatctctggtactcaaagtttgtaaggatgtaatggttcatcccacatccaagtgggaaatttgcctttgtttgt |
48099956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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