View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0476_low_5 (Length: 350)

Name: NF0476_low_5
Description: NF0476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0476_low_5
NF0476_low_5
[»] chr3 (5 HSPs)
chr3 (31-245)||(14174504-14174718)
chr3 (31-213)||(951896-952078)
chr3 (244-299)||(14174405-14174458)
chr3 (300-346)||(951774-951820)
chr3 (40-102)||(9462178-9462240)
[»] scaffold0007 (3 HSPs)
scaffold0007 (31-245)||(258360-258560)
scaffold0007 (258-299)||(258618-258659)
scaffold0007 (300-350)||(258692-258742)
[»] chr7 (4 HSPs)
chr7 (31-245)||(40723405-40723606)
chr7 (244-299)||(40723652-40723705)
chr7 (300-350)||(40723738-40723788)
chr7 (40-104)||(33288196-33288260)
[»] chr4 (2 HSPs)
chr4 (31-103)||(10714542-10714614)
chr4 (31-103)||(10928312-10928384)
[»] chr2 (1 HSPs)
chr2 (181-236)||(2193526-2193581)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 31 - 245
Target Start/End: Complemental strand, 14174718 - 14174504
Alignment:
Q  31 cattatcaatctctccaattcatccagctgtcacaggtatatctagccgcgaaaattatgattcaactttgattaattttgaacttaagtctgttcaaaa 130  Q
    ||||||| |||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14174718 cattatctatctctccaattcatccagccgtgacaggtatatctagcagcgaaaattatgattcaactttgattaattttgaacttaagtctgttcaaaa 14174619  T
Q  131 acattatactttgtggaaggtgttatttctctttcaatatgtttctataactatgctgaaaaacattttgaatattacttttcttcattcaaatgggaat 230  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14174618 acattatactttgtggaaggtgttatttctctttcaatctatttctataactatgctgaaaaacattttgaatattacttttcttcattcaaatgggaat 14174519  T
Q  231 cctttatatcttttg 245  Q
    |||||||||||||||    
T  14174518 cctttatatcttttg 14174504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 31 - 213
Target Start/End: Complemental strand, 952078 - 951896
Alignment:
Q  31 cattatcaatctctccaattcatccagctgtcacaggtatatctagccgcgaaaattatgattcaactttgattaattttgaacttaagtctgttcaaaa 130  Q
    |||||||||||||||||||||||||||| || |||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||  | ||||    
T  952078 cattatcaatctctccaattcatccagccgtgacagatatatctagcagcgaaaattatgattcaactttgattaattttgaacttaaatctaataaaaa 951979  T
Q  131 acattatactttgtggaaggtgttatttctctttcaatatgtttctataactatgctgaaaaacattttgaatattacttttc 213  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  951978 acattatactttgtggaaggtgttatttctctttcaatttgtttctataactatgctgaaaaacattttgaatattacttttc 951896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 299
Target Start/End: Complemental strand, 14174458 - 14174405
Alignment:
Q  244 tgagagataaattattatccccaaattttgaagttgattatctaaaatctaaatgt 299  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  14174458 tgagagataaatt--tatccccaaattttgaagttgattatctaaaatctaaatgt 14174405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 346
Target Start/End: Complemental strand, 951820 - 951774
Alignment:
Q  300 gtttaaaaattattgtaatcaccatggatatattttgacgtattaac 346  Q
    ||||||||||||||||||||||||||||| | ||||||||| |||||    
T  951820 gtttaaaaattattgtaatcaccatggatctcttttgacgttttaac 951774  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 9462178 - 9462240
Alignment:
Q  40 tctctccaattcatccagctgtcacaggtatatctagccgcgaaaattatgattcaactttga 102  Q
    ||||||||||||||||  | || ||| |||||||| || |||||||||||||||||| |||||    
T  9462178 tctctccaattcatccgaccgtgacatgtatatctggcagcgaaaattatgattcaattttga 9462240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 31 - 245
Target Start/End: Original strand, 258360 - 258560
Alignment:
Q  31 cattatcaatctctccaattcatccagctgtcacaggtatatctagccgcgaaaattatgattcaactttgattaattttgaacttaagtctgttcaaaa 130  Q
    ||||||||||||||||||||||||||||  | ||||||||||||||| ||||||||||||||||||||              ||||||||||||||||||    
T  258360 cattatcaatctctccaattcatccagccatgacaggtatatctagcagcgaaaattatgattcaact--------------acttaagtctgttcaaaa 258445  T
Q  131 acattatactttgtggaaggtgttatttctctttcaatatgtttctataactatgctgaaaaacattttgaatattacttttcttcattcaaatgggaat 230  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  258446 acattatactttgtggaaggtgttatttctctttcaatctgtttttataactatgctgaaaaacattttgaatattacttttcttcattcaaatgggaat 258545  T
Q  231 cctttatatcttttg 245  Q
    |||||||||||||||    
T  258546 cctttatatcttttg 258560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 258 - 299
Target Start/End: Original strand, 258618 - 258659
Alignment:
Q  258 ttatccccaaattttgaagttgattatctaaaatctaaatgt 299  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  258618 ttatccccaaattttgaagttgattatctaaaatctaaatgt 258659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 300 - 350
Target Start/End: Original strand, 258692 - 258742
Alignment:
Q  300 gtttaaaaattattgtaatcaccatggatatattttgacgtattaactaat 350  Q
    ||||||||||||||||||||||||||||| | ||||||||| |||||||||    
T  258692 gtttaaaaattattgtaatcaccatggatctcttttgacgttttaactaat 258742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 9e-61; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 31 - 245
Target Start/End: Original strand, 40723405 - 40723606
Alignment:
Q  31 cattatcaatctctccaattcatccagctgtcacaggtatatctagccgcgaaaattatgattcaactttgattaattttgaacttaagtctgttcaaaa 130  Q
    |||||||||||||||||||| |||| || || ||||||||||||||||||||||||||||||||||||              ||||||||||||| ||||    
T  40723405 cattatcaatctctccaatttatccggccgtgacaggtatatctagccgcgaaaattatgattcaact--------------acttaagtctgttaaaaa 40723490  T
Q  131 acattatactttgtggaaggtgttatttctctttcaatatgtttctataactatgctgaaaa--acattttgaatattacttttcttcattcaaatggga 228  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||| |    
T  40723491 acattatactttgtggaag-tgttatttctctttcaatctgtttctataactatgctgaaaaaaacattttgaatattacttttcttcattaaaatggaa 40723589  T
Q  229 atcctttatatcttttg 245  Q
    |||||||||||||||||    
T  40723590 atcctttatatcttttg 40723606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 299
Target Start/End: Original strand, 40723652 - 40723705
Alignment:
Q  244 tgagagataaattattatccccaaattttgaagttgattatctaaaatctaaatgt 299  Q
    |||||||||||||  |||||||| ||||||||||||||||||||||||||||||||    
T  40723652 tgagagataaatt--tatccccatattttgaagttgattatctaaaatctaaatgt 40723705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 350
Target Start/End: Original strand, 40723738 - 40723788
Alignment:
Q  300 gtttaaaaattattgtaatcaccatggatatattttgacgtattaactaat 350  Q
    |||||||||| |||||||||||||||||| | ||||||||| |||||||||    
T  40723738 gtttaaaaatgattgtaatcaccatggatctcttttgacgttttaactaat 40723788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 33288260 - 33288196
Alignment:
Q  40 tctctccaattcatccagctgtcacaggtatatctagccgcgaaaattatgattcaactttgatt 104  Q
    ||||||||||||||||  | || ||||||||||| | | || ||||||||||||||| |||||||    
T  33288260 tctctccaattcatccgaccgtgacaggtatatccaccagccaaaattatgattcaattttgatt 33288196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 10714614 - 10714542
Alignment:
Q  31 cattatcaatctctccaattcatccagctgtcacaggtatatctagccgcgaaaattatgattcaactttgat 103  Q
    |||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||    
T  10714614 cattatcaatctctccaattcatccagccgtgacaggtatatctagcagcgaaaattatgattcaactttgat 10714542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 10928384 - 10928312
Alignment:
Q  31 cattatcaatctctccaattcatccagctgtcacaggtatatctagccgcgaaaattatgattcaactttgat 103  Q
    |||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||    
T  10928384 cattatcaatctctccaattcatccagccgtgacaggtatatctagcagcgaaaattatgattcaactttgat 10928312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 2193581 - 2193526
Alignment:
Q  181 ctatgctgaaaaacattttgaatattacttttcttcattcaaatgggaatccttta 236  Q
    |||||| ||||||||||||||||  ||||| |||||||||||||  ||||||||||    
T  2193581 ctatgcagaaaaacattttgaattctacttctcttcattcaaatatgaatccttta 2193526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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