View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0476_low_8 (Length: 317)

Name: NF0476_low_8
Description: NF0476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0476_low_8
NF0476_low_8
[»] chr2 (4 HSPs)
chr2 (143-256)||(13066994-13067106)
chr2 (264-317)||(13067156-13067209)
chr2 (267-317)||(40915477-40915527)
chr2 (264-317)||(15930903-15930956)
[»] chr1 (3 HSPs)
chr1 (143-256)||(48538705-48538817)
chr1 (267-317)||(24535404-24535454)
chr1 (264-317)||(48538602-48538655)
[»] chr4 (2 HSPs)
chr4 (264-317)||(42998638-42998691)
chr4 (264-317)||(42999231-42999284)
[»] chr5 (3 HSPs)
chr5 (267-317)||(21012013-21012063)
chr5 (264-313)||(21654597-21654646)
chr5 (264-317)||(29632594-29632647)
[»] chr3 (3 HSPs)
chr3 (267-317)||(32793231-32793281)
chr3 (267-317)||(50833604-50833654)
chr3 (267-317)||(50842199-50842249)
[»] scaffold0421 (1 HSPs)
scaffold0421 (264-317)||(4615-4668)


Alignment Details
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 143 - 256
Target Start/End: Original strand, 13066994 - 13067106
Alignment:
Q  143 ttggaaaccgaaaaaggaggctgagtggagagattttctgttttccaaaccgaacagcaattggcgcaaataaatgcaattcattgtatcagcattctat 242  Q
    |||||||| |||||  |||||||||||||||||||| |||||||||| || | | || | | || ||||||||||||||||||||||||||| | | |||    
T  13066994 ttggaaactgaaaagagaggctgagtggagagattt-ctgttttccatacggcatagaattaggtgcaaataaatgcaattcattgtatcagaaatttat 13067092  T
Q  243 aaaaatggcacgtt 256  Q
     |||||||||||||    
T  13067093 caaaatggcacgtt 13067106  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 264 - 317
Target Start/End: Original strand, 13067156 - 13067209
Alignment:
Q  264 tttttagggttaacactaacaacaattaatgcaccaattttagagggaaatttt 317  Q
    ||||||||||||| ||||||  ||||||||| |||| |||||||||||||||||    
T  13067156 tttttagggttaatactaacggcaattaatgaaccagttttagagggaaatttt 13067209  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 317
Target Start/End: Original strand, 40915477 - 40915527
Alignment:
Q  267 ttagggttaacactaacaacaattaatgcaccaattttagagggaaatttt 317  Q
    ||||||||||||||||||||||||||| || || ||| |||||||| ||||    
T  40915477 ttagggttaacactaacaacaattaatacaacattttgagagggaattttt 40915527  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 317
Target Start/End: Original strand, 15930903 - 15930956
Alignment:
Q  264 tttttagggttaacactaacaacaattaatgcaccaattttagagggaaatttt 317  Q
    |||||||||||| |||||| |||||||||||||    |||||||||||||||||    
T  15930903 tttttagggttagcactaagaacaattaatgcattggttttagagggaaatttt 15930956  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 143 - 256
Target Start/End: Complemental strand, 48538817 - 48538705
Alignment:
Q  143 ttggaaaccgaaaaaggaggctgagtggagagattttctgttttccaaaccgaacagcaattggcgcaaataaatgcaattcattgtatcagcattctat 242  Q
    |||||||| |||||  |||||||||||||||||||| |||||||||| || | | || | | || ||||||||||||||||||||||||||| | | |||    
T  48538817 ttggaaactgaaaagagaggctgagtggagagattt-ctgttttccatacggcatagaattaggtgcaaataaatgcaattcattgtatcagaaatttat 48538719  T
Q  243 aaaaatggcacgtt 256  Q
     |||||||||||||    
T  48538718 caaaatggcacgtt 48538705  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 317
Target Start/End: Original strand, 24535404 - 24535454
Alignment:
Q  267 ttagggttaacactaacaacaattaatgcaccaattttagagggaaatttt 317  Q
    ||||||||||||||||||||||||||| || || ||| |||||||||||||    
T  24535404 ttagggttaacactaacaacaattaatacaacattttgagagggaaatttt 24535454  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 264 - 317
Target Start/End: Complemental strand, 48538655 - 48538602
Alignment:
Q  264 tttttagggttaacactaacaacaattaatgcaccaattttagagggaaatttt 317  Q
    ||||||||||||||||||||  ||||||||| | || |||||||||||||||||    
T  48538655 tttttagggttaacactaacggcaattaatgaaacagttttagagggaaatttt 48538602  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 317
Target Start/End: Original strand, 42998638 - 42998691
Alignment:
Q  264 tttttagggttaacactaacaacaattaatgcaccaattttagagggaaatttt 317  Q
    |||||||||||||||||||||||||||||||||  |  ||||||||||||||||    
T  42998638 tttttagggttaacactaacaacaattaatgcataagatttagagggaaatttt 42998691  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 264 - 317
Target Start/End: Original strand, 42999231 - 42999284
Alignment:
Q  264 tttttagggttaacactaacaacaattaatgcaccaattttagagggaaatttt 317  Q
    ||||||||||||||||||||| |||||||||||  |  ||||||||||||||||    
T  42999231 tttttagggttaacactaacagcaattaatgcataagatttagagggaaatttt 42999284  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 317
Target Start/End: Original strand, 21012013 - 21012063
Alignment:
Q  267 ttagggttaacactaacaacaattaatgcaccaattttagagggaaatttt 317  Q
    ||||||||||||||||||||||||||| || || ||| |||||||||||||    
T  21012013 ttagggttaacactaacaacaattaatacaacattttgagagggaaatttt 21012063  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 264 - 313
Target Start/End: Complemental strand, 21654646 - 21654597
Alignment:
Q  264 tttttagggttaacactaacaacaattaatgcaccaattttagagggaaa 313  Q
    |||||||||||||||||||||| |||||||||| ||  ||||||||||||    
T  21654646 tttttagggttaacactaacaataattaatgcatcagatttagagggaaa 21654597  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 264 - 317
Target Start/End: Original strand, 29632594 - 29632647
Alignment:
Q  264 tttttagggttaacactaacaacaattaatgcaccaattttagagggaaatttt 317  Q
    |||||||||| ||||||||||||||||||||||  |  ||||||||||||||||    
T  29632594 tttttagggtcaacactaacaacaattaatgcattagatttagagggaaatttt 29632647  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 317
Target Start/End: Original strand, 32793231 - 32793281
Alignment:
Q  267 ttagggttaacactaacaacaattaatgcaccaattttagagggaaatttt 317  Q
    ||||||||||||||||||||||||||| || || ||| |||||||||||||    
T  32793231 ttagggttaacactaacaacaattaatacaacattttgagagggaaatttt 32793281  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 317
Target Start/End: Original strand, 50833604 - 50833654
Alignment:
Q  267 ttagggttaacactaacaacaattaatgcaccaattttagagggaaatttt 317  Q
    ||||||||||||||||||||||||||| || || ||| |||| ||||||||    
T  50833604 ttagggttaacactaacaacaattaatacaacattttgagagagaaatttt 50833654  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 317
Target Start/End: Complemental strand, 50842249 - 50842199
Alignment:
Q  267 ttagggttaacactaacaacaattaatgcaccaattttagagggaaatttt 317  Q
    ||||||||||||||||||||||||||| || || ||| |||| ||||||||    
T  50842249 ttagggttaacactaacaacaattaatacaacattttgagagagaaatttt 50842199  T

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Target: scaffold0421 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 317
Target Start/End: Complemental strand, 4668 - 4615
Alignment:
Q  264 tttttagggttaacactaacaacaattaatgcaccaattttagagggaaatttt 317  Q
    |||||||||||| |||||| |||||||||||||    |||||||||||||||||    
T  4668 tttttagggttagcactaagaacaattaatgcattggttttagagggaaatttt 4615  T

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