View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0476_low_9 (Length: 304)
Name: NF0476_low_9
Description: NF0476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0476_low_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 29 - 304
Target Start/End: Complemental strand, 5980422 - 5980147
Alignment:
| Q |
29 |
aatgaagattattcaattcaattcagttcaagaggattctaagatgagattattagcttcaaccatagagaaggagtgattgtggtcgccttcataagta |
128 |
Q |
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| T |
5980422 |
aatgaagattattcaattcaattcagttcaagaggattctaagatgagattattagcttcaaccatagagagggagtgattgtggtcgccttcataagta |
5980323 |
T |
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| Q |
129 |
actaccaacatagatggatcatccagagctctttctacatgttttcgtgctggacaacctttaatactgctgcacttgtaataacccctgcagcagtaat |
228 |
Q |
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| T |
5980322 |
actaccaacatagatggatcatccaaagctctttctacatgttttcgtgctggacaacctttaatactgctgcacttgtaataacccctgcagcagtaat |
5980223 |
T |
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| Q |
229 |
aatcattgctctcaaatataacttactacttagtactcattactgctactcaattcaaaatcaacttaactcataa |
304 |
Q |
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| T |
5980222 |
aatcattgctctcaaatataacttactacttagtactcattactgctactcaattcaaaatcaacttaactcataa |
5980147 |
T |
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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 102 - 218
Target Start/End: Original strand, 39255358 - 39255474
Alignment:
| Q |
102 |
gagtgattgtggtcgccttcataagtaactaccaacatagatggatcatccagagctctttctacatgttttcgtgctggacaacctttaatactgctgc |
201 |
Q |
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||||||||||| || |||||||| |||||||||| |||||| | |||||| |||||||| |||||||| |||| ||||||||| ||| | | |||||| | |
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| T |
39255358 |
gagtgattgtgctctccttcataggtaactaccagcatagaagcatcatcaagagctctctctacatgctttcttgctggacaccctctcacactgctac |
39255457 |
T |
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| Q |
202 |
acttgtaataacccctg |
218 |
Q |
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| T |
39255458 |
acttgtagtatcccctg |
39255474 |
T |
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