View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0478-INSERTION-10 (Length: 110)
Name: NF0478-INSERTION-10
Description: NF0478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0478-INSERTION-10 |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 93; Significance: 9e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 9e-46
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 7815015 - 7815128
Alignment:
| Q |
1 |
aatttttcgttgaatctgagacgaaaatatttataacattttagagaacaaacttcccgatgcttaga----agcatcaaactagtcccttattcctaca |
96 |
Q |
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| T |
7815015 |
aatttttcgttgaatctgagacgaaaatatttacaacattttagagaacaaacttcccgatgcttagaatttagcatcaaactagtcccttattcctaca |
7815114 |
T |
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| Q |
97 |
ctagcttgtgctgg |
110 |
Q |
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| T |
7815115 |
ctagcttgtgctgg |
7815128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 9e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 9e-46
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 18157231 - 18157118
Alignment:
| Q |
1 |
aatttttcgttgaatctgagacgaaaatatttataacattttagagaacaaacttcccgatgcttaga----agcatcaaactagtcccttattcctaca |
96 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
18157231 |
aatttttcgttgaatctgagacgaaaatatttacaacattttagagaacaaacttcccgatgcttagaatttagcatcaaactagtcccttattcctaca |
18157132 |
T |
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| Q |
97 |
ctagcttgtgctgg |
110 |
Q |
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|||||||||||||| |
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| T |
18157131 |
ctagcttgtgctgg |
18157118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 37692135 - 37692177
Alignment:
| Q |
19 |
agacgaaaatatttataacattttagagaacaaacttcccgat |
61 |
Q |
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| T |
37692135 |
agacgaaaatatttataacattttacagaacaaacatcccgat |
37692177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 50428770 - 50428838
Alignment:
| Q |
1 |
aatttttcgttgaatctgagacgaaaatatttataacattttagagaacaaacttcccgatgcttagaa |
69 |
Q |
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|||||||| ||||||| ||||||||| ||||||| ||||||||||| ||||| |||| | |||||||| |
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| T |
50428770 |
aatttttcattgaatccaagacgaaaaaatttatagcattttagagagcaaacctcccaacgcttagaa |
50428838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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