View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0478-INSERTION-12 (Length: 163)
Name: NF0478-INSERTION-12
Description: NF0478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0478-INSERTION-12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 7e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 7e-63
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 3731371 - 3731210
Alignment:
| Q |
1 |
cttaaatttttattgtagtagtttccctattgaagttgattaaagttcatctannnnnnnnnnnngcagactctaaataaactctttattattaatgctg |
100 |
Q |
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| T |
3731371 |
cttaaatttttattgtagtagtttccctattgaagttgattaaagttcatctattttttttttt-gcagactctaaataaactctttattattaatgctg |
3731273 |
T |
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| Q |
101 |
gttctggctttaagatgttgtggaaagcagtgaaggcattcctaagtgaacgcacagtagcaa |
163 |
Q |
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| T |
3731272 |
gttctggctttaagatgttgtggaaagcagtgaaggcattcctaagtgaacgcacagtagcaa |
3731210 |
T |
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