View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0479_high_1 (Length: 458)

Name: NF0479_high_1
Description: NF0479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0479_high_1
NF0479_high_1
[»] chr7 (3 HSPs)
chr7 (184-429)||(45050826-45051071)
chr7 (1-187)||(45051109-45051296)
chr7 (318-351)||(23995452-23995485)
[»] chr2 (3 HSPs)
chr2 (318-429)||(37525871-37525982)
chr2 (379-429)||(38990800-38990850)
chr2 (379-417)||(38991257-38991295)
[»] chr5 (2 HSPs)
chr5 (318-429)||(30133659-30133770)
chr5 (318-354)||(34030436-34030472)
[»] chr6 (2 HSPs)
chr6 (371-429)||(26127914-26127972)
chr6 (318-366)||(26127995-26128043)
[»] chr8 (1 HSPs)
chr8 (318-354)||(14939567-14939603)
[»] chr4 (1 HSPs)
chr4 (318-354)||(1058241-1058277)


Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 184 - 429
Target Start/End: Complemental strand, 45051071 - 45050826
Alignment:
Q  184 ttagatccctttttgcaagtaagaaattggctatgatgttttaaattatgtttgtgtaagattttaaattatttaatttaaaacaaatgaactttcgtgt 283  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45051071 ttagatccctttttgcaagtaagaaattggttatgatgttttaaattatgtttgtgtaagattttaaattatttaatttaaaacaaatgaacttttgtgt 45050972  T
Q  284 ttaaacacacaaaaataaacacgtttgtataaccactagtatttccacccgtggaacgcatgggcgaaaaaggatttattgtgactaaacgtacaaccaa 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  45050971 ttaaacacacaaaaataaacacgtttgtataaccactagtatttccacccatgcaacgcatgggcgaaaaaggatttattgtgactaaacgtacaaccaa 45050872  T
Q  384 aataaaaacatataatgcatttcgtagacaaatcaaatgttgttgt 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  45050871 aataaaaacatataatgcatttcgtagacaaatcaaatgttgttgt 45050826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 45051296 - 45051109
Alignment:
Q  1 aggtaacaattttcacactcttcaatcaatatatttgtcattttaccaaaagtgtgatccaaatagttgatagtttttatgctactaaaaataaaaatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  45051296 aggtaacaattttcacactcttcaatcaatatatttgtcattttaccaaaagtgtgatccaaatagttgataatttttatgctactaaaaataaaaatag 45051197  T
Q  101 tagccattgttttagt-nnnnnnnnttagtcgatatttgaagctcttaaccgcatgatcacgagtttgattgtgaaaagatgtgttag 187  Q
    ||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45051196 tagccattgttttagtaaaaaaaaattagtcgatatttgaagctcttaaccgcatgatcacgagtttgattgtgaaaagatgtgttag 45051109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 351
Target Start/End: Complemental strand, 23995485 - 23995452
Alignment:
Q  318 actagtatttccacccgtggaacgcatgggcgaa 351  Q
    ||||||||||||||||||| ||||||||||||||    
T  23995485 actagtatttccacccgtgcaacgcatgggcgaa 23995452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 7e-47; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 318 - 429
Target Start/End: Original strand, 37525871 - 37525982
Alignment:
Q  318 actagtatttccacccgtggaacgcatgggcgaaaaaggatttattgtgactaaacgtacaaccaaaataaaaacatataatgcatttcgtagacaaatc 417  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  37525871 actagtatttccacccgtgcaacgcacgggcgaaaaaggatttattgtgactgaacgtacaaccaaaataaaaacatataatgcatttcttagacaaatc 37525970  T
Q  418 aaatgttgttgt 429  Q
    ||||||||||||    
T  37525971 aaatgttgttgt 37525982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 429
Target Start/End: Complemental strand, 38990850 - 38990800
Alignment:
Q  379 accaaaataaaaacatataatgcatttcgtagacaaatcaaatgttgttgt 429  Q
    |||||| |||||| |||||||||| ||| ||||||||||||||||| ||||    
T  38990850 accaaattaaaaatatataatgcaattcttagacaaatcaaatgttattgt 38990800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 38991295 - 38991257
Alignment:
Q  379 accaaaataaaaacatataatgcatttcgtagacaaatc 417  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  38991295 accaaaataaaaacatataatgcatttgttagacaaatc 38991257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 318 - 429
Target Start/End: Original strand, 30133659 - 30133770
Alignment:
Q  318 actagtatttccacccgtggaacgcatgggcgaaaaaggatttattgtgactaaacgtacaaccaaaataaaaacatataatgcatttcgtagacaaatc 417  Q
    |||||||||| ||||| || |  ||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||    
T  30133659 actagtattttcacccatgcattgcacgggcgaaaaaggatttattgtgaccgaacgtacaaccaaaataaaaacatataatgcatttcttagacaaatc 30133758  T
Q  418 aaatgttgttgt 429  Q
    ||||||| ||||    
T  30133759 aaatgttcttgt 30133770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 34030472 - 34030436
Alignment:
Q  318 actagtatttccacccgtggaacgcatgggcgaaaaa 354  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  34030472 actagtatttccacccgtgcaacgcacgggcgaaaaa 34030436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 371 - 429
Target Start/End: Complemental strand, 26127972 - 26127914
Alignment:
Q  371 aacgtacaaccaaaataaaaacatataatgcatttcgtagacaaatcaaatgttgttgt 429  Q
    ||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  26127972 aacgtacaatcaaaataaaaacatataatgcacttcttagacaaatcaaatgttgttgt 26127914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 26128043 - 26127995
Alignment:
Q  318 actagtatttccacccgtggaacgcatgggcgaaaaaggatttattgtg 366  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  26128043 actagtatttccacccgtgcaacgcacgggcgaaaaaggatttattgtg 26127995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 14939603 - 14939567
Alignment:
Q  318 actagtatttccacccgtggaacgcatgggcgaaaaa 354  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  14939603 actagtatttccacccgtgcaacgcacgggcgaaaaa 14939567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 1058241 - 1058277
Alignment:
Q  318 actagtatttccacccgtggaacgcatgggcgaaaaa 354  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  1058241 actagtatttccacccgtgcaacgcacgggcgaaaaa 1058277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University