View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0479_high_10 (Length: 251)

Name: NF0479_high_10
Description: NF0479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0479_high_10
NF0479_high_10
[»] chr2 (4 HSPs)
chr2 (1-243)||(36711133-36711373)
chr2 (52-102)||(99390-99440)
chr2 (51-103)||(4516477-4516529)
chr2 (48-96)||(35010501-35010549)
[»] chr6 (1 HSPs)
chr6 (49-103)||(12889381-12889435)
[»] chr1 (5 HSPs)
chr1 (49-103)||(6983935-6983989)
chr1 (49-95)||(17470480-17470526)
chr1 (49-102)||(2436020-2436073)
chr1 (50-103)||(52910196-52910249)
chr1 (50-102)||(19701549-19701601)
[»] scaffold0057 (1 HSPs)
scaffold0057 (49-102)||(47010-47063)
[»] chr3 (3 HSPs)
chr3 (52-101)||(25944449-25944498)
chr3 (49-102)||(34420771-34420824)
chr3 (50-102)||(45620956-45621008)


Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 36711133 - 36711373
Alignment:
Q  1 aaaagactcggccaaaagtgttgttgtaattttataccttcattgacgaagggggagccttggtacaatagtaaagttgttgtcacgtaactgaaatgtc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||| |||||||||||||||||||||||||||||||    
T  36711133 aaaagactcggccaaaagtgttgttgtaattttataccttcattgacgaagggg-agccttgacacaacagtaaagttgttgtcacgtaactgaaatgtc 36711231  T
Q  101 acaaatccataagtttaagtcttgaaaatatcatcttgtgtnnnnnnnnncatgataaaagtgcatacaatacaccaaaaacggtgaatcaaatgacgac 200  Q
    |||||||||||||||||||||||||||| ||||||||||||         |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36711232 acaaatccataagtttaagtcttgaaaacatcatcttgtgt-aaaaaaaacatgataaaagtgcgtacaatacaccaaaaacggtgaatcaaatgacgac 36711330  T
Q  201 cccacgttgcctactatgtaggccaaggccctcgcttcatctc 243  Q
    | ||||||||||||||||||||||||||||||| |||||||||    
T  36711331 cacacgttgcctactatgtaggccaaggccctctcttcatctc 36711373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 99440 - 99390
Alignment:
Q  52 ggggagccttggtacaatagtaaagttgttgtcacgtaactgaaatgtcac 102  Q
    ||||||||||||  ||| ||||||||||||||||||| ||||||| |||||    
T  99440 ggggagccttggcgcaacagtaaagttgttgtcacgtgactgaaaggtcac 99390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 4516529 - 4516477
Alignment:
Q  51 gggggagccttggtacaatagtaaagttgttgtcacgtaactgaaatgtcaca 103  Q
    |||||||||||||  |||  |||||||||||||||||| ||||||| ||||||    
T  4516529 gggggagccttggcgcaacggtaaagttgttgtcacgtgactgaaaggtcaca 4516477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 35010501 - 35010549
Alignment:
Q  48 gaagggggagccttggtacaatagtaaagttgttgtcacgtaactgaaa 96  Q
    ||||||||||||||||| |||  ||||||||||||||| || |||||||    
T  35010501 gaagggggagccttggtgcaacggtaaagttgttgtcatgtgactgaaa 35010549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 12889381 - 12889435
Alignment:
Q  49 aagggggagccttggtacaatagtaaagttgttgtcacgtaactgaaatgtcaca 103  Q
    ||||||||||||||| ||||  |||||||||||||||||| | ||||| ||||||    
T  12889381 aagggggagccttggcacaacggtaaagttgttgtcacgtgagtgaaaggtcaca 12889435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 6983989 - 6983935
Alignment:
Q  49 aagggggagccttggtacaatagtaaagttgttgtcacgtaactgaaatgtcaca 103  Q
    ||||| |||||||||  |||| |||||||||||||||||| ||||||| ||||||    
T  6983989 aagggagagccttggcgcaatggtaaagttgttgtcacgtgactgaaaggtcaca 6983935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 17470526 - 17470480
Alignment:
Q  49 aagggggagccttggtacaatagtaaagttgttgtcacgtaactgaa 95  Q
    |||||||||||||||| |||  |||||||||||||||||| ||||||    
T  17470526 aagggggagccttggtgcaacggtaaagttgttgtcacgtgactgaa 17470480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 2436073 - 2436020
Alignment:
Q  49 aagggggagccttggtacaatagtaaagttgttgtcacgtaactgaaatgtcac 102  Q
    ||||||| |||||||| |||  |||||||||||||||||| ||||||| |||||    
T  2436073 aagggggggccttggtgcaacggtaaagttgttgtcacgtgactgaaaggtcac 2436020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 52910196 - 52910249
Alignment:
Q  50 agggggagccttggtacaatagtaaagttgttgtcacgtaactgaaatgtcaca 103  Q
    ||||||||||||||| |||  ||||||||||||||| || ||||||| ||||||    
T  52910196 agggggagccttggtgcaacggtaaagttgttgtcatgtgactgaaaggtcaca 52910249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 19701549 - 19701601
Alignment:
Q  50 agggggagccttggtacaatagtaaagttgttgtcacgtaactgaaatgtcac 102  Q
    ||||||||||||||  ||| |||||||||||||||  || |||||||||||||    
T  19701549 agggggagccttggcgcaacagtaaagttgttgtcgtgtgactgaaatgtcac 19701601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 47063 - 47010
Alignment:
Q  49 aagggggagccttggtacaatagtaaagttgttgtcacgtaactgaaatgtcac 102  Q
    ||||| |||||||||  |||||||||||||||||||| || ||||||| |||||    
T  47063 aagggagagccttggcgcaatagtaaagttgttgtcaggtgactgaaaggtcac 47010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 25944449 - 25944498
Alignment:
Q  52 ggggagccttggtacaatagtaaagttgttgtcacgtaactgaaatgtca 101  Q
    ||||||||||||  ||| ||||||||||||||||||| ||||||| ||||    
T  25944449 ggggagccttggcgcaacagtaaagttgttgtcacgtgactgaaaggtca 25944498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 34420824 - 34420771
Alignment:
Q  49 aagggggagccttggtacaatagtaaagttgttgtcacgtaactgaaatgtcac 102  Q
    ||||||| |||||||  ||| ||||||||||||||||||| ||||||| |||||    
T  34420824 aagggggggccttggcgcaacagtaaagttgttgtcacgtgactgaaaggtcac 34420771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 45621008 - 45620956
Alignment:
Q  50 agggggagccttggtacaatagtaaagttgttgtcacgtaactgaaatgtcac 102  Q
    ||||||||||||||  |||  |||||||||||||||||| ||||||| |||||    
T  45621008 agggggagccttggcgcaacggtaaagttgttgtcacgtgactgaaaggtcac 45620956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University