View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0479_high_4 (Length: 298)
Name: NF0479_high_4
Description: NF0479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0479_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 5e-68; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 31 - 193
Target Start/End: Complemental strand, 13656977 - 13656815
Alignment:
| Q |
31 |
caataatatctctcaaaatagacttaccatacaatctcagtgacaaaattacatcacctaccttttctccaaatccaggatgtttctcctcactgtgaca |
130 |
Q |
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| T |
13656977 |
caattatatctttcaacaaaggcttaccatacaaactcagtgacaaaattacatcacctaccttttctccaaatccaggatgtttctcctcactgtgaaa |
13656878 |
T |
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| Q |
131 |
atcagagatggtcttgaattgaagctcagggtaacattctaaaagagcttgaatatcatcatt |
193 |
Q |
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| T |
13656877 |
atcagagatggtcttgaattgaagcttagggtaacattctaaaagagcttgaatatcatcatt |
13656815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 31 - 193
Target Start/End: Complemental strand, 13646651 - 13646489
Alignment:
| Q |
31 |
caataatatctctcaaaatagacttaccatacaatctcagtgacaaaattacatcacctaccttttctccaaatccaggatgtttctcctcactgtgaca |
130 |
Q |
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| T |
13646651 |
caattatatctttcaacaaaggcttaccatacaaactcagtgacgtaattacatcacctatcctttctccaaatccaggatgcttctcttcactatgaaa |
13646552 |
T |
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| Q |
131 |
atcagagatggtcttgaattgaagctcagggtaacattctaaaagagcttgaatatcatcatt |
193 |
Q |
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| T |
13646551 |
atcagagatagtcttgaattgaagcttagggtaacattctaaaagagcttgaatatcatcatt |
13646489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 93 - 168
Target Start/End: Complemental strand, 13651670 - 13651595
Alignment:
| Q |
93 |
ttttctccaaatccaggatgtttctcctcactgtgacaatcagagatggtcttgaattgaagctcagggtaacatt |
168 |
Q |
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|||||||||||||||||||| ||||||| | | ||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
13651670 |
ttttctccaaatccaggatgcttctccttattttgaaaatcagagatggtcttgaattgaagcttagggtaacatt |
13651595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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