View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0479_high_5 (Length: 295)
Name: NF0479_high_5
Description: NF0479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0479_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 30 - 286
Target Start/End: Complemental strand, 14416932 - 14416676
Alignment:
| Q |
30 |
gattttcttataagcataatgtgaatgcaagttcttgggtgtctatggtattttctgcatgataaattgagcaaatttttgtggcatcgattttatgact |
129 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14416932 |
gattttcttataagcatattgtgaatgcaagttcttgggtgtctattgtattttctgcatgatgaattgtgcaaatttttgtggcatcgattttatgact |
14416833 |
T |
|
| Q |
130 |
ttttaagaatcattttcaggtcaaagtggcttgttttactttggatggcaaaaatggtagctcgagtaacctgaatttggggccttcttcaataccaata |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14416832 |
ttttaagaatcattttcaggtcaaagtggcttgttttactttggatgacaaaaatggtagctcgagtaacctgaatttggggccttcttcaataccaata |
14416733 |
T |
|
| Q |
230 |
tcccaatttgctgcttttgggactccaactagtgctaccactcaaggtccttcatct |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14416732 |
tcccaatttgctgcttttgggactccaactagtgctaccactcaaggtccttcatct |
14416676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 41 - 265
Target Start/End: Complemental strand, 14426973 - 14426751
Alignment:
| Q |
41 |
aagcataatgtgaatgcaagttcttgggtgtctatggtattttctgcatgataaattgagcaaatttttgtggcatcgattttatgactttttaagaatc |
140 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||| |||||||||||| || ||||||||||||||| |||| | |||||| ||||||||||||||||| |
|
|
| T |
14426973 |
aagcaaaatgtgaatgtaagttcttgggtgtctatagtattttctgcacgacgaattgagcaaatttt-gtgggaccgattt-atgactttttaagaatc |
14426876 |
T |
|
| Q |
141 |
attttcaggtcaaagtggcttgttttactttggatggcaaaaatggtagctcgagtaacctgaatttggggccttcttcaataccaatatcccaatttgc |
240 |
Q |
| |
|
|||||||||| | ||||| | ||||||||||||||||||||||| ||||||| ||||||||||| |||||| |||||||||| | ||||| |||||||| |
|
|
| T |
14426875 |
attttcaggttatagtgggtagttttactttggatggcaaaaattgtagctcaagtaacctgaaattggggtcttcttcaatgacgatatctcaatttgc |
14426776 |
T |
|
| Q |
241 |
tgcttttgggactccaactagtgct |
265 |
Q |
| |
|
|||| | ||||||||||||||||| |
|
|
| T |
14426775 |
tgctcctaggactccaactagtgct |
14426751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 284
Target Start/End: Complemental strand, 3409833 - 3409671
Alignment:
| Q |
122 |
ttatgactttttaagaatcattttcaggtcaaagtggcttgttttactttggatggcaaaaatggtagctcgagtaacctgaatttggggccttcttcaa |
221 |
Q |
| |
|
||||||||| |||| |||||||| ||||||| |||| | ||||||||||||||| || || | |||||||| |||| |||| | |||||||||||| |
|
|
| T |
3409833 |
ttatgacttattaaaaatcatttacaggtcactgtgggtagttttactttggatgttaagaaggctagctcgaataacttgaaaattgggccttcttcag |
3409734 |
T |
|
| Q |
222 |
taccaatatcccaatttgctgcttttgggactccaactagtgctaccactcaaggtccttcat |
284 |
Q |
| |
|
| ||| |||||| ||||||||| ||||||||||| |||||||| |||||| ||||||| |
|
|
| T |
3409733 |
tgccatcgtcccaaattgctgcttctgggactccaatcggtgctacccttcaagggccttcat |
3409671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 286
Target Start/End: Original strand, 4867398 - 4867554
Alignment:
| Q |
130 |
ttttaagaatcattttcaggtcaaagtggcttgttttactttggatggcaaaaatggtagctcgagtaacctgaatttggggccttcttcaataccaata |
229 |
Q |
| |
|
||||||||||||||| ||||||| ||||| | ||||||| |||||||||||||| | || || ||||||||| | | ||||||||| | || | |
|
|
| T |
4867398 |
ttttaagaatcatttccaggtcatagtgggtagttttacattggatggcaaaaagaatggcctgaataacctgaaatatgaaccttcttcagcatcattg |
4867497 |
T |
|
| Q |
230 |
tcccaatttgctgcttttgggactccaactagtgctaccactcaaggtccttcatct |
286 |
Q |
| |
|
|||||| ||| ||||||||| |||||||| | ||| |||||||| || ||||||||| |
|
|
| T |
4867498 |
tcccaacttgttgcttttggaactccaaccaatgcgaccactcacgggccttcatct |
4867554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 218
Target Start/End: Original strand, 4244789 - 4244900
Alignment:
| Q |
107 |
tttgtggcatcgattttatgactttttaagaatcattttcaggtcaaagtggcttgttttactttggatggcaaaaatggtagctcgagtaacctgaatt |
206 |
Q |
| |
|
||||| ||||| ||||||||||||||||| |||| ||| ||| ||| |||| | ||||||||||| ||| ||||| | |||||||| |||| |||| |
|
|
| T |
4244789 |
tttgttgcatcaattttatgactttttaataatcgtttacagatcacggtgggtagttttactttgagtggaaaaaaggctagctcgaataacttgaaag |
4244888 |
T |
|
| Q |
207 |
tggggccttctt |
218 |
Q |
| |
|
| |||||||||| |
|
|
| T |
4244889 |
tcgggccttctt |
4244900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 144
Target Start/End: Original strand, 4251429 - 4251466
Alignment:
| Q |
107 |
tttgtggcatcgattttatgactttttaagaatcattt |
144 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
4251429 |
tttgttgcatcaattttatgactttttaagaatcattt |
4251466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University