View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0479_high_9 (Length: 251)
Name: NF0479_high_9
Description: NF0479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0479_high_9 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 22 - 251
Target Start/End: Complemental strand, 38471548 - 38471321
Alignment:
| Q |
22 |
catcatcatatgaacnnnnnnntgtcattgttttggcccttggaattgc-accatggatgtagcttacaaattcagataccctaacccgaacttgattaa |
120 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38471548 |
catcatcatatgaacaaaaaaatgtcattgttttggcccttggaattgctaccatggatgtagcttacaaattcagataccctaacccgaacttgattaa |
38471449 |
T |
|
| Q |
121 |
agagcaagtaataatatacttatctaaacctttaattaaagaatgaaagaaatatataaagcttttaacgataagatagtgctaattagtgcatctgaaa |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
38471448 |
agagcaagtaataatatacttatctaaacctttaattaaagaatgaaagaaatatataaaccttttaacgataagatagtgct--------catctgaaa |
38471357 |
T |
|
| Q |
221 |
cact-----agaaagttaaaataaataaaaaattat |
251 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |
|
|
| T |
38471356 |
cactagttaagaaagttaaaataaataaaaaattat |
38471321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University