View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0479_low_1 (Length: 553)

Name: NF0479_low_1
Description: NF0479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0479_low_1
NF0479_low_1
[»] chr8 (4 HSPs)
chr8 (7-394)||(42234186-42234574)
chr8 (321-392)||(33072194-33072265)
chr8 (319-392)||(1286905-1286977)
chr8 (320-392)||(1291613-1291684)
[»] chr4 (7 HSPs)
chr4 (319-394)||(43683479-43683554)
chr4 (321-392)||(35843023-35843094)
chr4 (338-390)||(27186427-27186479)
chr4 (319-392)||(31354963-31355036)
chr4 (338-394)||(50627765-50627822)
chr4 (324-361)||(31359450-31359487)
chr4 (341-392)||(41885201-41885253)
[»] chr3 (5 HSPs)
chr3 (338-394)||(43548001-43548057)
chr3 (338-390)||(9697869-9697921)
chr3 (328-392)||(39398928-39398992)
chr3 (343-394)||(43554846-43554897)
chr3 (324-392)||(38175586-38175654)
[»] chr2 (2 HSPs)
chr2 (319-394)||(13270828-13270902)
chr2 (338-394)||(35950263-35950320)
[»] chr7 (1 HSPs)
chr7 (338-394)||(733492-733548)
[»] chr1 (2 HSPs)
chr1 (338-394)||(3742758-3742814)
chr1 (321-394)||(10504711-10504783)
[»] chr5 (2 HSPs)
chr5 (321-394)||(10277478-10277550)
chr5 (319-394)||(10274820-10274894)


Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 7 - 394
Target Start/End: Original strand, 42234186 - 42234574
Alignment:
Q  7 gagaaaagaaagcatgaaatattagaataacaatatgtgtacaagatgcaaggaatatatgtttacgtagaagaatagctataatttgatcacaaagaat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42234186 gagaaaagaaagcatgaaatattagaataacaatatgtgtacaagatgcaagggatatatgtttacgtagaagaatagctataatttgatcacaaagaat 42234285  T
Q  107 ttggatttggttccttacttctatatcctc-aagactattctgcccatttagtttagcgttgagattcacatgccagtcgtagagattagagaagaatgt 205  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42234286 ttggatttggttccttacttctatatcctccaagactattctgcccatttagtttagcgttgagattcacatgccagtcgtagagattagagaagaatgt 42234385  T
Q  206 tactgcagatttgaacccacgttctaatatatcaaatgttcatacatgtcaatttcactcctttttatttgttaataattgtcaatatggtgatgaagtc 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  42234386 tactgcagatttgaacccacgttctaatatatcaaatgttcatacatgtcaatttcactcctttttatttgttaataattgtcaatatggtgatgacgtc 42234485  T
Q  306 cttcacataaagttttgttagcgcagcacaacaaagcttgttcaacaagcaatgaaaccataagcaattttgtagtttttagggtttgt 394  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42234486 cttcacttaaagttttgttagcgcagcacaacaaagcttgttcaacaagcaatgaaaccagaagcaattttgtagtttttagggtttgt 42234574  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 321 - 392
Target Start/End: Complemental strand, 33072265 - 33072194
Alignment:
Q  321 tgttagcgcagcacaacaaagcttgttcaacaagcaatgaaaccataagcaattttgtagtttttagggttt 392  Q
    ||||||||||| |||||||||||||||||||||||||||||  || |||||| |||||||||| ||||||||    
T  33072265 tgttagcgcagtacaacaaagcttgttcaacaagcaatgaactcagaagcaaatttgtagtttctagggttt 33072194  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 319 - 392
Target Start/End: Complemental strand, 1286977 - 1286905
Alignment:
Q  319 tttgttagcgcagcacaacaaagcttgttcaacaagcaatgaaaccataagcaattttgtagtttttagggttt 392  Q
    |||||||||||| ||||||||||||||||||||||||||||||| || |||| | |||||||||| ||||||||    
T  1286977 tttgttagcgcaacacaacaaagcttgttcaacaagcaatgaaatcagaagc-agtttgtagtttctagggttt 1286905  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 320 - 392
Target Start/End: Complemental strand, 1291684 - 1291613
Alignment:
Q  320 ttgttagcgcagcacaacaaagcttgttcaacaagcaatgaaaccataagcaattttgtagtttttagggttt 392  Q
    ||||||| ||||||||||||||||| |||||||| |||||||| ||||||| | |||||||||| ||||||||    
T  1291684 ttgttagtgcagcacaacaaagcttattcaacaaacaatgaaatcataagc-agtttgtagtttctagggttt 1291613  T

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Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 319 - 394
Target Start/End: Original strand, 43683479 - 43683554
Alignment:
Q  319 tttgttagcgcagcacaacaaagcttgttcaacaagcaatgaaaccataagcaattttgtagtttttagggtttgt 394  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||    
T  43683479 tttgttagcgcaacacaacaaagcttgttcaacaagcaatgaaaccagaagcaattttttagtttctagggtttgt 43683554  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 321 - 392
Target Start/End: Complemental strand, 35843094 - 35843023
Alignment:
Q  321 tgttagcgcagcacaacaaagcttgttcaacaagcaatgaaaccataagcaattttgtagtttttagggttt 392  Q
    ||||||||||||||||||||||||||||||||| |||||||  || |||||  |||||||||||||||||||    
T  35843094 tgttagcgcagcacaacaaagcttgttcaacaaacaatgaactcagaagcagatttgtagtttttagggttt 35843023  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 338 - 390
Target Start/End: Complemental strand, 27186479 - 27186427
Alignment:
Q  338 aaagcttgttcaacaagcaatgaaaccataagcaattttgtagtttttagggt 390  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  27186479 aaagcttgttcaacaagcaatgaaaccagaagcaattttgtagtttctagggt 27186427  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 319 - 392
Target Start/End: Complemental strand, 31355036 - 31354963
Alignment:
Q  319 tttgttagcgcagcacaacaaagcttgttcaacaagcaatgaaaccataagcaattttgtagtttttagggttt 392  Q
    |||| |||||||| |||||||||||||||||||||||||||||  | ||||||  |||||||||| ||||||||    
T  31355036 tttgatagcgcagtacaacaaagcttgttcaacaagcaatgaactcgtaagcagatttgtagtttctagggttt 31354963  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 394
Target Start/End: Original strand, 50627765 - 50627822
Alignment:
Q  338 aaagcttgttcaacaagcaatgaaa-ccataagcaattttgtagtttttagggtttgt 394  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||    
T  50627765 aaagcttgttcaacaagcaatgaaaaccagaagcaattttgtagtttctagggtttgt 50627822  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 324 - 361
Target Start/End: Complemental strand, 31359487 - 31359450
Alignment:
Q  324 tagcgcagcacaacaaagcttgttcaacaagcaatgaa 361  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31359487 tagcgcagcacaacaaagcttgttcaacaagcaatgaa 31359450  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 392
Target Start/End: Complemental strand, 41885253 - 41885201
Alignment:
Q  341 gcttgttcaacaagcaatg-aaaccataagcaattttgtagtttttagggttt 392  Q
    ||||||||||||||||||| |||||| ||| ||||||||||||| ||||||||    
T  41885253 gcttgttcaacaagcaatgaaaaccagaagaaattttgtagtttctagggttt 41885201  T

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Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 338 - 394
Target Start/End: Complemental strand, 43548057 - 43548001
Alignment:
Q  338 aaagcttgttcaacaagcaatgaaaccataagcaattttgtagtttttagggtttgt 394  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43548057 aaagcttgttcaacaagcaatgaaaccagaagcaattttgtagtttttagggtttgt 43548001  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 338 - 390
Target Start/End: Complemental strand, 9697921 - 9697869
Alignment:
Q  338 aaagcttgttcaacaagcaatgaaaccataagcaattttgtagtttttagggt 390  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  9697921 aaagcttgttcaacaagcaatgaaaccagaagcaattttgtagtttctagggt 9697869  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 328 - 392
Target Start/End: Original strand, 39398928 - 39398992
Alignment:
Q  328 gcagcacaacaaagcttgttcaacaagcaatgaaaccataagcaattttgtagtttttagggttt 392  Q
    ||||||||||||||||||||||||||||||||||  || ||||| ||||||||||| ||||||||    
T  39398928 gcagcacaacaaagcttgttcaacaagcaatgaactcagaagcagttttgtagtttctagggttt 39398992  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 343 - 394
Target Start/End: Complemental strand, 43554897 - 43554846
Alignment:
Q  343 ttgttcaacaagcaatgaaaccataagcaattttgtagtttttagggtttgt 394  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  43554897 ttgttcaacaagcaatgaaaccataagcaattttatagtttctagggtttgt 43554846  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 392
Target Start/End: Original strand, 38175586 - 38175654
Alignment:
Q  324 tagcgcagcacaacaaagcttgttcaacaagcaatgaaaccataagcaattttgtagtttttagggttt 392  Q
    ||||||| ||| ||||| ||||||||||||||||||||| || || || ||||||||||| ||||||||    
T  38175586 tagcgcaacactacaaatcttgttcaacaagcaatgaaatcagaaacagttttgtagtttctagggttt 38175654  T

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Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 319 - 394
Target Start/End: Original strand, 13270828 - 13270902
Alignment:
Q  319 tttgttagcgcagcacaacaaagcttgttcaacaagcaatgaaa-ccataagcaattttgtagtttttagggtttgt 394  Q
    |||||||||||||||| |  |||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||    
T  13270828 tttgttagcgcagcacta--aagcttgttcaacaagcaatgaaaaccagaagcaattttgtagtttctagggtttgt 13270902  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 394
Target Start/End: Original strand, 35950263 - 35950320
Alignment:
Q  338 aaagcttgttcaacaagcaatgaaa-ccataagcaattttgtagtttttagggtttgt 394  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||    
T  35950263 aaagcttgttcaacaagcaatgaaaaccagaagcaattttgtagtttctagggtttgt 35950320  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 338 - 394
Target Start/End: Original strand, 733492 - 733548
Alignment:
Q  338 aaagcttgttcaacaagcaatgaaaccataagcaattttgtagtttttagggtttgt 394  Q
    |||||||||||||||||||||||||||| |||||||||| | |||| ||||||||||    
T  733492 aaagcttgttcaacaagcaatgaaaccagaagcaatttttttgtttctagggtttgt 733548  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 338 - 394
Target Start/End: Complemental strand, 3742814 - 3742758
Alignment:
Q  338 aaagcttgttcaacaagcaatgaaaccataagcaattttgtagtttttagggtttgt 394  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||  ||||||||    
T  3742814 aaagcttgttcaacaagcaatgaaatcaaaagcaattttgtagttttatgggtttgt 3742758  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 321 - 394
Target Start/End: Complemental strand, 10504783 - 10504711
Alignment:
Q  321 tgttagcgcagcacaacaaagcttgttcaacaagcaatg-aaaccataagcaattttgtagtttttagggtttgt 394  Q
    |||||||||| |||||  ||||||||||||||||||||| ||| || ||||||||||||||||| ||||||||||    
T  10504783 tgttagcgcaacacaa--aagcttgttcaacaagcaatgaaaaacagaagcaattttgtagtttctagggtttgt 10504711  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 321 - 394
Target Start/End: Complemental strand, 10277550 - 10277478
Alignment:
Q  321 tgttagcgcagcacaacaaagcttgttcaacaagcaatg-aaaccataagcaattttgtagtttttagggtttgt 394  Q
    |||||||||||||| |  ||||||||||||||||||||| |||||| |||||||||| |||||| || |||||||    
T  10277550 tgttagcgcagcacta--aagcttgttcaacaagcaatgaaaaccagaagcaattttttagtttctaaggtttgt 10277478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 319 - 394
Target Start/End: Complemental strand, 10274894 - 10274820
Alignment:
Q  319 tttgttagcgcagcacaacaaagcttgttcaacaagcaatg-aaaccataagcaattttgtagtttttagggtttgt 394  Q
    |||||||||||||||| |  ||||||||||||||||||||| |||| | |||||||||  |||||| ||||||||||    
T  10274894 tttgttagcgcagcacta--aagcttgttcaacaagcaatgaaaacgagaagcaatttcatagtttctagggtttgt 10274820  T

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