View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0479_low_10 (Length: 278)
Name: NF0479_low_10
Description: NF0479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0479_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 42 - 230
Target Start/End: Complemental strand, 44727840 - 44727652
Alignment:
| Q |
42 |
agaggtgtttgaaaattgtgaaaggctaatcatccaatgcatacaagatgcaaagatagaagttgagaatataaacgatgtgataattgtaggtggatgt |
141 |
Q |
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| T |
44727840 |
agaggtgtttgaaaattgtgaaaagctaatcatccaatgcatacaagatgcaaagatagaagttgagaatataaacgatgtgataattgtaggtggatgt |
44727741 |
T |
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| Q |
142 |
tgtaatataccaagggtagagagtcttgttactaaaatatgcaaaggaaagaaaccttataagttaggtgtgaaccctttggatgatgt |
230 |
Q |
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| T |
44727740 |
tgtaatataccaagggtagagagtcttgttactaaaatatgcaaaggaaagaaaccttataagttaggtgtgaaccctttggatgatgt |
44727652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 47843089 - 47843250
Alignment:
| Q |
42 |
agaggtgtttgaaaattgtgaaaggctaatcatccaatgcatacaagatgcaaagatagaagttgagaatataaacgatgtgataattgtaggtggatgt |
141 |
Q |
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||||||||||||||| ||||||||||| ||||||||| || | ||||||||| | ||| ||||||| ||||||| |||||||||||||| ||||||||| |
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| T |
47843089 |
agaggtgtttgaaaagtgtgaaaggctgatcatccaaagcttgcaagatgcagatataaaagttgatgatataaatgatgtgataattgttggtggatgt |
47843188 |
T |
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| Q |
142 |
tgtaatataccaagggtagagagtcttgttactaaaatatgcaaaggaaagaaaccttataa |
203 |
Q |
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|| |||||||| | ||| || |||||||||||||||||||||||||||| ||| |||||| |
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| T |
47843189 |
tggaatataccgaaggtgaaggatcttgttactaaaatatgcaaaggaaaggaactttataa |
47843250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 42 - 192
Target Start/End: Complemental strand, 47845338 - 47845187
Alignment:
| Q |
42 |
agaggtgtttgaaaattgtgaaagg--ctaatcatccaatgcatacaagatgcaaagatagaagttgagaatataaacgatgtgataattgtaggtggat |
139 |
Q |
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| T |
47845338 |
agaggtgtttgagaagtgtgaaaggggctaatcatccaatgcttgcatgatgcaaaggtggaaactaagaatataaatgatgtgataattgtaggtggat |
47845239 |
T |
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| Q |
140 |
gttgtaatataccaagggtagagagtcttgttactaaaatatgcaaaggaaag |
192 |
Q |
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| T |
47845238 |
gttgtaatataccaa-ggtgaagaatcttgttactaaaatatgcaaagtaaag |
47845187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 67 - 191
Target Start/End: Complemental strand, 42926810 - 42926687
Alignment:
| Q |
67 |
ctaatcatccaatgcatacaagatgcaaagatagaagttgagaatataaacgatgtgataattgtaggtggatgttgtaatataccaagggtagagagtc |
166 |
Q |
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| T |
42926810 |
ctaatcatccaatgcttgcaagatgcaaaagtagacgttgagagtataaatgatgtgataattgtaggt-gatgttgtattataccaaaggtggagaatc |
42926712 |
T |
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| Q |
167 |
ttgttactaaaatatgcaaaggaaa |
191 |
Q |
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||||||||| ||||||||||||||| |
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| T |
42926711 |
ttgttactacaatatgcaaaggaaa |
42926687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 42 - 191
Target Start/End: Complemental strand, 47879488 - 47879339
Alignment:
| Q |
42 |
agaggtgtttgaaaattgtgaaaggctaatcatccaatgcatacaagatgcaaagatagaagttgagaatataaacgatgtgataattgtaggtggatgt |
141 |
Q |
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|||||| ||||||| |||||||||||||||||||| ||| | ||||||||||| | | ||||||| |||| ||||| |||||||| ||||||||| |
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| T |
47879488 |
agaggtatttgaaatatgtgaaaggctaatcatccagtgcttgaaagatgcaaagtgaaacactgagaatttaaatgatgttataattgttggtggatgt |
47879389 |
T |
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| Q |
142 |
tgtaatataccaagggtagagagtcttgttactaaaatatgcaaaggaaa |
191 |
Q |
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|| |||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
47879388 |
tggaatataccaagggtgaagaatcttgttactaaaatatgcaaaggaaa |
47879339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 21130988 - 21130922
Alignment:
| Q |
83 |
tacaagatgcaaagatagaagttgagaatataaacgatgtgataattgtaggtggatgttgtaatat |
149 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||||||| ||| |||||||||||||||| |
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| T |
21130988 |
tacaagatgcaaaggtagaagttgagaatataaatgatgtgataatggtaagtggatgttgtaatat |
21130922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 21251038 - 21251104
Alignment:
| Q |
83 |
tacaagatgcaaagatagaagttgagaatataaacgatgtgataattgtaggtggatgttgtaatat |
149 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||||||| ||| |||||||||||||||| |
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| T |
21251038 |
tacaagatgcaaaggtagaagttgagaatataaatgatgtgataatggtaagtggatgttgtaatat |
21251104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 142
Target Start/End: Original strand, 808226 - 808326
Alignment:
| Q |
42 |
agaggtgtttgaaaattgtgaaaggctaatcatccaatgcatacaagatgcaaagatagaagttgagaatataaacgatgtgataattgtaggtggatgt |
141 |
Q |
| |
|
||||||||| ||||| |||||||| || ||||||||||| |||| ||||||||| ||||||| | | ||||||| ||||||||| |||| ||||||||| |
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| T |
808226 |
agaggtgttcgaaaagtgtgaaagccttatcatccaatgtttacatgatgcaaaggtagaagtcggggatataaatgatgtgatacttgttggtggatgt |
808325 |
T |
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| Q |
142 |
t |
142 |
Q |
| |
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| |
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|
| T |
808326 |
t |
808326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 183
Target Start/End: Original strand, 39241876 - 39242015
Alignment:
| Q |
44 |
aggtgtttgaaaattgtgaaaggctaatcatccaatgcatacaagatgcaaagatagaagttgagaatataaacgatgtgataattgtaggtggatgttg |
143 |
Q |
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||||||||| ||| |||||||| || |||||||| || |||| ||||||||| || |||||||| || |||| |||||||||||||| | |||||||| |
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| T |
39241876 |
aggtgtttggaaaatgtgaaagccttatcatccagtgtttacatgatgcaaaggtaaaagttgaggatgtaaatgatgtgataattgttgatggatgttc |
39241975 |
T |
|
| Q |
144 |
taatataccaagggtagagagtcttgttactaaaatatgc |
183 |
Q |
| |
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| |||| |||||||| || ||||||||| || |||||| |
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| T |
39241976 |
ttatatcccaagggtgaggaatcttgttaccaagatatgc |
39242015 |
T |
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