View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0479_low_12 (Length: 252)
Name: NF0479_low_12
Description: NF0479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0479_low_12 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 108 - 252
Target Start/End: Original strand, 38471017 - 38471160
Alignment:
| Q |
108 |
aatatattatcacttaaaggttcatataagtatattattacttcgacaaatttctttcattcttgttaacaatgtaaaggttacaataagtatattatta |
207 |
Q |
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| T |
38471017 |
aatatattatcacttaaaggttcatataactatattattacttcgacaaatttctttccctcttgttaacaat-taaaggttacaataagtatattatta |
38471115 |
T |
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| Q |
208 |
cttaaagtttcagatagatatattattacttagacaaacttcttt |
252 |
Q |
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| T |
38471116 |
cttaaagtttcagatagatatattattacttagacaaacttcttt |
38471160 |
T |
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Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 38470642 - 38470729
Alignment:
| Q |
30 |
tgttttgctttacattacgttttatgcatttcttacttcaataagtttaaaaaatacc-tttaagtaaatgtttcgacaaatatatta |
116 |
Q |
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| T |
38470642 |
tgttttgctttactttacgttttatgcatttcttacttcaataagcttaaaaaacaccttttaagtaaatgtttcgacaaatatatta |
38470729 |
T |
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