View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0479_low_4 (Length: 365)
Name: NF0479_low_4
Description: NF0479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0479_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 36710858 - 36710634
Alignment:
| Q |
1 |
tataaatacataatgcatataatatactgcagtgctcactgttaatttgatcctgtaaaaataatcatcatgtatttgttttcattttgataatgattaa |
100 |
Q |
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| T |
36710858 |
tataagtacatattgcatataatataatgcattgttaactgttaatttgatcctgtaaaaataatcatcatgtatttgttttcattttgataatgattaa |
36710759 |
T |
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| Q |
101 |
taacatgtactagtaattatctactcttgtgtaaaagaaatccaaatacatttcattctacctatgaaaaggaatctaattttcattgttcttccacaaa |
200 |
Q |
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| T |
36710758 |
taacatgtactagtaattatctactcttgtgtaaaagaaatccaaatacatttcattctacctatgaaaaggaatctaattttcattgttcttccacaaa |
36710659 |
T |
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| Q |
201 |
ataaccacatgctatacagttaggt |
225 |
Q |
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| T |
36710658 |
ataaccacatgctatacagttaggt |
36710634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 267 - 336
Target Start/End: Complemental strand, 36710592 - 36710523
Alignment:
| Q |
267 |
tatagactcgtgtctccaactatagtgatccatctttttatgtcctttttgcctctttgtttatttgtca |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36710592 |
tatagactcgtgtctccaactatagtgatccatctttttatgtcctttttgcctctttgtttatttgtca |
36710523 |
T |
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