View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0480_low_3 (Length: 500)
Name: NF0480_low_3
Description: NF0480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0480_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 31 - 358
Target Start/End: Complemental strand, 43713157 - 43712839
Alignment:
| Q |
31 |
ttatttggagtaaaaatacacattaattaaatattttagcaaggggaatcaattgtttttatctgaataatgttaaaaagtttcattcccataaaccttt |
130 |
Q |
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| T |
43713157 |
ttatttggagtaaaaatacacattaattaaatattttagcgatgtgaatcaattgtttttatctgaataatgttaaaaagtttcattcccataaaccttt |
43713058 |
T |
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| Q |
131 |
tcaccgcaaagtcctattgaaattccttatcacacgccatgtgtttgcttgtttgtttgtttggtctggtctggtcaatatgataaatgaaaggtgaatt |
230 |
Q |
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| T |
43713057 |
tcaccgcaaaatcctattgaaattccttatcacacgccatgtgtttgcttgtttgtttgtt-----cggtctggtcaatatgataaatgaaaggtgaatt |
43712963 |
T |
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| Q |
231 |
gataaaagagaaaagaaagggtccaaaatatcaaaattaactttaatttnnnnnnnnnnnnnnngaaaatgtaccattttatcatgaatgatgaaagcca |
330 |
Q |
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| T |
43712962 |
gataaaagagaaaagaaagggtccaaaatatcaaaattaactttaattt----tttctctctctgaaaatgtaccattttatcatgaatgatgaaagcca |
43712867 |
T |
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| Q |
331 |
gatgaaagggaaaatttgatgcaacagc |
358 |
Q |
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| T |
43712866 |
agggaaagggaaaatttgatgcaacagc |
43712839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 500
Target Start/End: Complemental strand, 11030053 - 11029996
Alignment:
| Q |
443 |
atacagtagactaaaatttaattctcatttttcttattcattatgctgcagtgaatta |
500 |
Q |
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|||||||||| || ||| ||||||| |||||||||||| |||||||| ||||||||| |
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| T |
11030053 |
atacagtagattacaatgtaattctattttttcttattccttatgctgaagtgaatta |
11029996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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