View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0482_high_12 (Length: 277)
Name: NF0482_high_12
Description: NF0482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0482_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 31 - 183
Target Start/End: Original strand, 6077825 - 6077977
Alignment:
| Q |
31 |
agagacgttccaaattacaattgcaagag--acgtttcatccacacataaagagaaaaacatgacagggtttcaccaagttcctatatttcttaaccc-t |
127 |
Q |
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| T |
6077825 |
agagacgttccaaattacaattgcaagagagacgtttcatccaaagataaagaggaaagcatgacagggtttcaccaagtttctatatttcttttccctt |
6077924 |
T |
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| Q |
128 |
ttatcatccattttattttggaacaaagagaaatatacatttcatccaattgacaa |
183 |
Q |
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| T |
6077925 |
ttatcatcca-tttatttt--aacaaagagaaatatacatttcatccatttgacaa |
6077977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 9765832 - 9765900
Alignment:
| Q |
26 |
ggagcagagacgttccaaattacaattgcaagagacgtttcatccacacataaagagaaaaacatgacagg |
96 |
Q |
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| T |
9765832 |
ggagcagggacgt-ccaaattacaattgcaagagacatttcatccaaagatagagag-gaaacatgacagg |
9765900 |
T |
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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 27273077 - 27272982
Alignment:
| Q |
34 |
gacgttccaaattacaattgcaagagacgtttcatccacacataaagagaaaaacatgacagggtttcaccaagttcctatatttcttaacccttt |
129 |
Q |
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| T |
27273077 |
gacgttccaaattacaattgcaagagacgtttcatccacagataaagacgaaaacatgacagggtttcatcaagtttctatctttcttatcccttt |
27272982 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 13550308 - 13550247
Alignment:
| Q |
139 |
tttattttggaacaaagagaaatatacatttcatccaattgacaacaatgggtgcatacttt |
200 |
Q |
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| T |
13550308 |
tttattttagaacaaagagaaatatacatttcatccaattgacaacaatgggtgcatacttt |
13550247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 13550354 - 13550309
Alignment:
| Q |
26 |
ggagcagagacgttccaaattacaattgcaagagacgtttcatcca |
71 |
Q |
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| T |
13550354 |
ggagcagggacgttccaaattacaattacaagagacgtttcatcca |
13550309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 43651678 - 43651610
Alignment:
| Q |
26 |
ggagcagagacgttccaaattacaattgcaagagacgtttcatccacacataaagagaaaaacatgacagg |
96 |
Q |
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| T |
43651678 |
ggagcagggacgt-ccaaattacaattgcaagagacatttcatccaaagatagagag-gaaacatgacagg |
43651610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 21114887 - 21114819
Alignment:
| Q |
26 |
ggagcagagacgttccaaattacaattgcaagagacgtttcatccacacataaagagaaaaacatgacagg |
96 |
Q |
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||||||| ||||| |||||||||||||||||||||| ||||||||| | ||| |||| |||||||||||| |
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| T |
21114887 |
ggagcagggacgt-ccaaattacaattgcaagagacatttcatccaaagatagagag-gaaacatgacagg |
21114819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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