View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0482_high_3 (Length: 467)
Name: NF0482_high_3
Description: NF0482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0482_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 133 - 454
Target Start/End: Complemental strand, 16229111 - 16228787
Alignment:
| Q |
133 |
ccaaagctagggataatagtaagtcacattgaatcatcttaagaacattcgtaaacacataaaaagcaataagaacaagttataattgaataaaagcaaa |
232 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
16229111 |
ccaaagttagggataatagtaagtcacattgaatcatcttaagaacattcgtaaacacatagaaaacaataagaacaagttataattgaataaaagcaaa |
16229012 |
T |
|
| Q |
233 |
cacaacgattgtattcaaagtcaactgaatatattacgtggttcaagcaa---cagagaggaacatataaatgacctaacctagaagatttctatcaaat |
329 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
16229011 |
cacaacgattgtattcaaagtcaagtgaatatattacgtggttcaagcaatcacatagaggaacatatacatgacctaacctaaaagatttctatcaaat |
16228912 |
T |
|
| Q |
330 |
tataactaaacatagacaagagaatatgtaaagaaataaatgaatttggatcatcgttgatcaattcctcacctctaggatgccttcgatcgctgttagc |
429 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
16228911 |
tataactaaacataaacaagagaatatgtaaagaaataaatgaatttggatcatcgttgatcaattcctcacctctaggatgccttcgatcgctgatagc |
16228812 |
T |
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| Q |
430 |
cttcctagttcgcgatttcaccttc |
454 |
Q |
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||||||||||| ||||||||||||| |
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| T |
16228811 |
cttcctagttcacgatttcaccttc |
16228787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 16229280 - 16229177
Alignment:
| Q |
30 |
ctttgttaatgtgtcacaagaactcttctccagttacaaccccttaatgtcttaagtgagactgcaacctttgaaggtttgaatgagcaccaaactattg |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
16229280 |
ctttgttaatgtgtcacaagaactcttctccagttacaaccccttaatgtcttaagtgagactgtaacctttgaaggtttgtatgagcaccaaactattg |
16229181 |
T |
|
| Q |
130 |
tcac |
133 |
Q |
| |
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|||| |
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| T |
16229180 |
tcac |
16229177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 17099929 - 17099848
Alignment:
| Q |
51 |
actcttctccagttacaaccccttaatgtcttaagtgagactgcaacctttgaaggtttgaatgagcaccaaactattgtca |
132 |
Q |
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|||||||||| |||||||| | |||||||||| ||||| || ||| ||||||||||||||||||| |||||||||||||| |
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| T |
17099929 |
actcttctcctgttacaactctctaatgtcttaggtgagtttgtaacatttgaaggtttgaatgagcgccaaactattgtca |
17099848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 24800871 - 24800804
Alignment:
| Q |
160 |
attgaatcatcttaagaacattcgtaaacacataaaaagcaataagaacaagttataattgaataaaa |
227 |
Q |
| |
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|||||||||| ||| |||||||||||||| || ||||| || ||| |||||||||||||||||||||| |
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| T |
24800871 |
attgaatcattttatgaacattcgtaaacgcacaaaaaacattaacaacaagttataattgaataaaa |
24800804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 31525853 - 31525800
Alignment:
| Q |
381 |
catcgttgatcaattcctcacctctaggatgccttcgatcgctgttagccttccta |
436 |
Q |
| |
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|||||||| ||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
31525853 |
catcgttggtcaattcctca--tctaggatgccttcgatcgctagtagccttccta |
31525800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 139
Target Start/End: Original strand, 24454407 - 24454495
Alignment:
| Q |
51 |
actcttctccagttacaaccccttaatgtcttaagtgagactgcaacctttgaaggtttgaatgagcaccaaactattgtcaccaaagc |
139 |
Q |
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|||||||||| |||||| || |||||||||| ||||| || ||||||||||||||| ||||||| |||||||||||||| ||||| |
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| T |
24454407 |
actcttctcctattacaatcctctaatgtcttaggtgagcttgtaacctttgaaggttttaatgagcgtcaaactattgtcacaaaagc |
24454495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 452
Target Start/End: Original strand, 40537663 - 40537780
Alignment:
| Q |
335 |
ctaaacatagacaagagaatatgtaaagaaataaatgaatttggatcatcgttgatcaattcctcacctctaggatgccttcgatcgctgttagccttcc |
434 |
Q |
| |
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||||||||| || | |||||||||||| |||| |||||| |||||||||| | || | |||| ||||| | |||| ||| ||||| || || |||||| |
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| T |
40537663 |
ctaaacataaacgaaagaatatgtaaaacaatacgtgaattaggatcatcgtgggtcgactccttacctccaagatgactttgatcgttggtaaccttcc |
40537762 |
T |
|
| Q |
435 |
tagttcgcgatttcacct |
452 |
Q |
| |
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|| |||||||||||||| |
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| T |
40537763 |
taaatcgcgatttcacct |
40537780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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