View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0482_high_6 (Length: 377)

Name: NF0482_high_6
Description: NF0482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0482_high_6
NF0482_high_6
[»] chr3 (2 HSPs)
chr3 (75-153)||(8522320-8522398)
chr3 (248-281)||(8522163-8522196)
[»] chr6 (1 HSPs)
chr6 (85-156)||(25523842-25523913)
[»] chr5 (3 HSPs)
chr5 (75-140)||(42116959-42117024)
chr5 (127-156)||(42122700-42122729)
chr5 (127-156)||(42128095-42128124)
[»] chr4 (1 HSPs)
chr4 (127-156)||(11117357-11117386)


Alignment Details
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 75 - 153
Target Start/End: Complemental strand, 8522398 - 8522320
Alignment:
Q  75 gagtgagatgaaggacaagaatgacgaggaaccatggttcaaccatgaatcagaatcagaatcagatggtgcaaatgtc 153  Q
    |||||| | |||||||||||||||||||||||||  |||||| || |||||||||||||||||||||||||||||||||    
T  8522398 gagtgaaaagaaggacaagaatgacgaggaaccaaagttcaatcacgaatcagaatcagaatcagatggtgcaaatgtc 8522320  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 281
Target Start/End: Complemental strand, 8522196 - 8522163
Alignment:
Q  248 tgtttataagtgcatgccacaagatgtgttatat 281  Q
    ||||||||||||||||||||||| ||||||||||    
T  8522196 tgtttataagtgcatgccacaagttgtgttatat 8522163  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 85 - 156
Target Start/End: Original strand, 25523842 - 25523913
Alignment:
Q  85 aaggacaagaatgacgaggaaccatggttcaaccatgaatcagaatcagaatcagatggtgcaaatgtcata 156  Q
    |||||||||||||| |||||| |||||| || |||||||||||||||||||||||||| |||||||||||||    
T  25523842 aaggacaagaatgaggaggaatcatggtacagccatgaatcagaatcagaatcagatgatgcaaatgtcata 25523913  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 42117024 - 42116959
Alignment:
Q  75 gagtgagatgaaggacaagaatgacgaggaaccatggttcaaccatgaatcagaatcagaatcaga 140  Q
    |||||| | |||| ||||||||||  |||||||||||| |||||||||||||||||||||||||||    
T  42117024 gagtgaaaagaagaacaagaatgagaaggaaccatggtacaaccatgaatcagaatcagaatcaga 42116959  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 156
Target Start/End: Complemental strand, 42122729 - 42122700
Alignment:
Q  127 gaatcagaatcagatggtgcaaatgtcata 156  Q
    ||||||||||||||||||||||||||||||    
T  42122729 gaatcagaatcagatggtgcaaatgtcata 42122700  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 156
Target Start/End: Complemental strand, 42128124 - 42128095
Alignment:
Q  127 gaatcagaatcagatggtgcaaatgtcata 156  Q
    ||||||||||||||||||||||||||||||    
T  42128124 gaatcagaatcagatggtgcaaatgtcata 42128095  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 156
Target Start/End: Complemental strand, 11117386 - 11117357
Alignment:
Q  127 gaatcagaatcagatggtgcaaatgtcata 156  Q
    ||||||||||||||||||||||||||||||    
T  11117386 gaatcagaatcagatggtgcaaatgtcata 11117357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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