View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0482_low_1 (Length: 559)

Name: NF0482_low_1
Description: NF0482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0482_low_1
NF0482_low_1
[»] chr6 (11 HSPs)
chr6 (87-457)||(7926728-7927101)
chr6 (196-402)||(180320-180526)
chr6 (197-369)||(34837113-34837285)
chr6 (92-156)||(7929036-7929100)
chr6 (242-388)||(606625-606771)
chr6 (226-283)||(12143711-12143768)
chr6 (227-285)||(31116418-31116476)
chr6 (242-307)||(12453713-12453778)
chr6 (242-321)||(6657939-6658018)
chr6 (227-285)||(31117343-31117401)
chr6 (309-371)||(12144074-12144136)
[»] chr8 (20 HSPs)
chr8 (196-405)||(8251212-8251422)
chr8 (226-405)||(16890260-16890442)
chr8 (196-408)||(2207746-2207956)
chr8 (230-382)||(1445353-1445505)
chr8 (197-388)||(31658847-31659037)
chr8 (226-405)||(2520125-2520302)
chr8 (226-375)||(2152328-2152477)
chr8 (242-388)||(36054810-36054956)
chr8 (225-286)||(30653622-30653683)
chr8 (315-383)||(40694231-40694299)
chr8 (247-382)||(29916965-29917099)
chr8 (336-383)||(40696658-40696705)
chr8 (290-388)||(11778032-11778130)
chr8 (245-283)||(30870752-30870790)
chr8 (336-387)||(30112527-30112578)
chr8 (242-285)||(40314312-40314355)
chr8 (259-321)||(6396452-6396514)
chr8 (336-382)||(30654264-30654310)
chr8 (343-384)||(43836932-43836973)
chr8 (353-389)||(35431578-35431614)
[»] chr7 (19 HSPs)
chr7 (196-402)||(41508080-41508286)
chr7 (226-388)||(20949067-20949228)
chr7 (215-377)||(12506713-12506875)
chr7 (215-381)||(7307441-7307608)
chr7 (215-377)||(12485281-12485443)
chr7 (196-285)||(45072480-45072569)
chr7 (248-377)||(46341502-46341631)
chr7 (230-371)||(6549065-6549206)
chr7 (227-304)||(34470136-34470213)
chr7 (341-384)||(2195803-2195846)
chr7 (355-402)||(6549222-6549269)
chr7 (231-382)||(10599747-10599898)
chr7 (310-381)||(37048576-37048647)
chr7 (291-398)||(46101269-46101376)
chr7 (229-315)||(15033299-15033385)
chr7 (351-388)||(17205123-17205160)
chr7 (87-120)||(28914875-28914908)
chr7 (246-282)||(15028808-15028844)
chr7 (348-380)||(26195874-26195906)
[»] chr2 (22 HSPs)
chr2 (215-378)||(3268802-3268965)
chr2 (215-378)||(3269361-3269524)
chr2 (215-378)||(3269920-3270083)
chr2 (227-398)||(38214097-38214268)
chr2 (231-380)||(40503877-40504026)
chr2 (227-389)||(39063587-39063749)
chr2 (215-382)||(40442718-40442885)
chr2 (215-427)||(38496428-38496640)
chr2 (227-402)||(19285860-19286035)
chr2 (215-398)||(16781246-16781428)
chr2 (227-398)||(40664218-40664390)
chr2 (227-304)||(21794914-21794992)
chr2 (215-324)||(4015769-4015878)
chr2 (242-382)||(14200375-14200514)
chr2 (351-402)||(3711954-3712005)
chr2 (242-321)||(32872402-32872481)
chr2 (242-284)||(34309310-34309352)
chr2 (341-405)||(2761521-2761584)
chr2 (215-277)||(2761616-2761680)
chr2 (247-284)||(44883181-44883218)
chr2 (230-358)||(31404969-31405097)
chr2 (341-381)||(44883270-44883310)
[»] scaffold0024 (1 HSPs)
scaffold0024 (196-388)||(154334-154526)
[»] chr3 (21 HSPs)
chr3 (227-382)||(40344925-40345078)
chr3 (226-402)||(35455288-35455460)
chr3 (226-388)||(45261358-45261517)
chr3 (226-387)||(17003569-17003729)
chr3 (227-402)||(8825352-8825524)
chr3 (226-362)||(36659206-36659340)
chr3 (242-388)||(46918471-46918616)
chr3 (226-425)||(43320129-43320322)
chr3 (291-402)||(32211846-32211957)
chr3 (264-380)||(25295082-25295198)
chr3 (226-283)||(42279228-42279285)
chr3 (242-307)||(49983783-49983848)
chr3 (341-382)||(18085656-18085696)
chr3 (242-307)||(24650196-24650261)
chr3 (86-119)||(27636771-27636804)
chr3 (86-119)||(27639809-27639842)
chr3 (230-283)||(27828545-27828598)
chr3 (215-280)||(28695646-28695713)
chr3 (340-388)||(38854608-38854656)
chr3 (88-120)||(43598863-43598895)
chr3 (230-286)||(52427083-52427139)
[»] chr4 (16 HSPs)
chr4 (199-365)||(31707317-31707480)
chr4 (242-388)||(18838746-18838891)
chr4 (226-387)||(47231565-47231724)
chr4 (225-286)||(33721602-33721663)
chr4 (226-372)||(30615129-30615272)
chr4 (242-388)||(27032132-27032278)
chr4 (242-314)||(42183528-42183601)
chr4 (251-402)||(34319532-34319682)
chr4 (215-285)||(32599740-32599809)
chr4 (232-283)||(42312399-42312450)
chr4 (336-382)||(16572252-16572298)
chr4 (242-381)||(25376852-25376991)
chr4 (226-286)||(44720574-44720634)
chr4 (341-412)||(44884457-44884530)
chr4 (350-398)||(54863908-54863956)
chr4 (341-377)||(56093596-56093632)
[»] chr1 (22 HSPs)
chr1 (242-378)||(39150189-39150324)
chr1 (230-382)||(46443702-46443852)
chr1 (226-382)||(9851805-9851960)
chr1 (230-388)||(28165121-28165279)
chr1 (225-389)||(31181042-31181207)
chr1 (230-371)||(42454868-42455009)
chr1 (242-402)||(17971370-17971530)
chr1 (242-389)||(3574719-3574868)
chr1 (226-382)||(31152435-31152589)
chr1 (242-402)||(36437207-36437367)
chr1 (255-382)||(11435553-11435679)
chr1 (251-382)||(28469934-28470064)
chr1 (225-285)||(17988145-17988205)
chr1 (242-402)||(27442380-27442539)
chr1 (242-405)||(42745521-42745683)
chr1 (310-378)||(17988359-17988427)
chr1 (226-302)||(31003576-31003652)
chr1 (272-321)||(26976609-26976658)
chr1 (225-324)||(2619677-2619777)
chr1 (230-278)||(25130217-25130265)
chr1 (347-382)||(31003693-31003728)
chr1 (230-273)||(45691597-45691640)
[»] scaffold0088 (1 HSPs)
scaffold0088 (226-388)||(51267-51429)
[»] chr5 (13 HSPs)
chr5 (215-378)||(18705003-18705166)
chr5 (215-402)||(6688767-6688956)
chr5 (226-402)||(11691051-11691225)
chr5 (242-380)||(3629217-3629355)
chr5 (243-324)||(14417914-14417995)
chr5 (226-362)||(11983574-11983709)
chr5 (215-376)||(2225586-2225747)
chr5 (230-381)||(4449438-4449589)
chr5 (242-378)||(7735758-7735894)
chr5 (291-379)||(3257266-3257354)
chr5 (242-302)||(29948075-29948135)
chr5 (242-286)||(14917819-14917863)
chr5 (87-120)||(6447478-6447511)
[»] scaffold0836 (1 HSPs)
scaffold0836 (242-398)||(3006-3162)


Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 87 - 457
Target Start/End: Complemental strand, 7927101 - 7926728
Alignment:
Q  87 gacaccccacttattcactttaaagatgaatttcaatcaatttacaaactcaacacaaacaaactaactactccctccggtctttattataagnnnnnnn 186  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||           
T  7927101 gacatcccacttattcactttaaagatgaatttcaatcaacttacaaactcaacacaaacaaactaattactccctccggtctttattataagaaaataa 7927002  T
Q  187 nnnnnnnnn-catcaaaaccaatacgcaaattaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaataca 285  Q
              ||||||||||||||| || ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  7927001 aacaaaaaaacatcaaaaccaatacacacattaattagtataactttttgaataagattacaaatataccctcataaaaaattgtgaagcattaaataca 7926902  T
Q  286 ctctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaac 385  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||  ||    
T  7926901 ctctttaatattaaaaagacaactattaaataaggggtatataagttttctaaaaaataattacactttaaaagttgtgatattttcttataaatatgac 7926802  T
Q  386 ca--atatcttttttgaaatttcttttatgcataagatcggaggagtaaattttaatttggagatttcggattc 457  Q
    ||  || | |||||||||||||||||||| ||||||| | ||||||||| ||||||||||||||||||||||||    
T  7926801 caacattttttttttgaaatttcttttatacataagaccagaggagtaagttttaatttggagatttcggattc 7926728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 196 - 402
Target Start/End: Complemental strand, 180526 - 180320
Alignment:
Q  196 catcaaaaccaatacgcaaattaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaata 295  Q
    ||||||||||||||| |  |||||||||  |||||||||||||| ||||||||||||||||| |||||||||| |||| | |||||||||     |||||    
T  180526 catcaaaaccaatacactcattaattagtgtaactttttgaatatgtttacaaatatacccttataaaaaattttgaagcgttaaatacatcgactaata 180427  T
Q  296 tttaaaagacaactattaaataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaatatcttt 395  Q
    || |||||||||  ||||||||||||||||| |||| || |||| ||||| |||| ||||||| ||||||||||||||||||||||| ||||| |  |||    
T  180426 ttaaaaagacaaacattaaataaggggtataaaagtcttttaagcaataactacatcttaaaaattgtgatattttcttataaataggaccaacaaattt 180327  T
Q  396 tttgaaa 402  Q
    |||||||    
T  180326 tttgaaa 180320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 197 - 369
Target Start/End: Original strand, 34837113 - 34837285
Alignment:
Q  197 atcaaaaccaatacgcaaattaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatat 296  Q
    ||||||| |||||| |  |||||||||  ||||||||||||||  |||||||||||||||||||||||||||||||| |||| ||||||  | |||||||    
T  34837113 atcaaaatcaatacactcattaattagtgtaactttttgaatatttttacaaatataccctcataaaaaattgtgaagcattcaatacatccattaatat 34837212  T
Q  297 ttaaaagacaactattaaataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatatt 369  Q
    | |||||||||  ||||||||||||||| | |||| || |||  ||||  |||||||||||||||| ||||||    
T  34837213 taaaaagacaagcattaaataaggggtaaaaaagtcttttaaacaatagctacaccttaaaagttgcgatatt 34837285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 7929100 - 7929036
Alignment:
Q  92 cccacttattcactttaaagatgaatttcaatcaatttacaaactcaacacaaacaaactaacta 156  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7929100 cccacttattcactttaaagatgaatttcaatcaacttacaaactcaacacaaacaaactaacta 7929036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 242 - 388
Target Start/End: Original strand, 606625 - 606771
Alignment:
Q  242 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaa 341  Q
    |||||||||||||||| ||| ||  |||||||||||||||||||  |  ||||||| |||| |||   |||||||||||| |  | |||| || ||||      
T  606625 tttacaaatatacccttatagaatgttgtgaaacattaaatacatccactaatattaaaaatacagtcattaaataagggattaaaaagtattttaagct 606724  T
Q  342 ataattacaccttaaaagttgtgatattttcttataaatagaaccaa 388  Q
    |||| ||||||||||||||||||| |||||||||||||||| |||||    
T  606725 ataagtacaccttaaaagttgtgacattttcttataaataggaccaa 606771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 226 - 283
Target Start/End: Original strand, 12143711 - 12143768
Alignment:
Q  226 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaata 283  Q
    ||||||||||||||  |||||||||| ||||||||||||||||||||| |||||||||    
T  12143711 taactttttgaatatttttacaaatacaccctcataaaaaattgtgaagcattaaata 12143768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 31116476 - 31116418
Alignment:
Q  227 aactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaataca 285  Q
    ||||||||||||| ||||||||||||||||| ||| | |||||||||||||| ||||||    
T  31116476 aactttttgaatatgtttacaaatatacccttatagagaattgtgaaacattcaataca 31116418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 12453713 - 12453778
Alignment:
Q  242 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaa 307  Q
    ||||||||||||| || ||||||| || |||||||||||| ||| || ||||||||||||||||||    
T  12453713 tttacaaatatactctaataaaaagttatgaaacattaaacacattcattaatatttaaaagacaa 12453778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 242 - 321
Target Start/End: Complemental strand, 6658018 - 6657939
Alignment:
Q  242 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggg 321  Q
    |||||||||||||||||||||||| |||||||  |||||||| || |  ||||||| |||||||||  ||||||| ||||    
T  6658018 tttacaaatataccctcataaaaatttgtgaagtattaaatatacccactaatattaaaaagacaaacattaaatgaggg 6657939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 31117401 - 31117343
Alignment:
Q  227 aactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaataca 285  Q
    ||||||||||||| ||||||||||||||| | ||| | |||||||||||||| ||||||    
T  31117401 aactttttgaatatgtttacaaatatacctttatagagaattgtgaaacattcaataca 31117343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 309 - 371
Target Start/End: Original strand, 12144074 - 12144136
Alignment:
Q  309 tattaaataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatatttt 371  Q
    |||||||||| ||||||| |||| || |||  |||||||||||||||||| |||||| |||||    
T  12144074 tattaaataaagggtataaaagtcttttaaataataattacaccttaaaaattgtgacatttt 12144136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 196 - 405
Target Start/End: Complemental strand, 8251422 - 8251212
Alignment:
Q  196 catcaaaaccaatacgcaaattaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaata 295  Q
    ||||||||||||||| |  |||||||||  ||  ||||||||||  |||||||||||||||||||||||||||||||| ||||||||| ||||  |||||    
T  8251422 catcaaaaccaatacactcattaattagtgtagttttttgaatatttttacaaatataccctcataaaaaattgtgaagcattaaataaactcactaata 8251323  T
Q  296 tttaaaagacaactattaaataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaacc-aatatctt 394  Q
    || |||||||||| ||||||||| ||| | | | || || |||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||    
T  8251322 ttaaaaagacaaccattaaataatggggaaaaaggtcttttaagcaataattacaccttaaaagttgtgatattttcttataaataggaccaaatatttt 8251223  T
Q  395 ttttgaaattt 405  Q
    |||| ||||||    
T  8251222 ttttaaaattt 8251212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 226 - 405
Target Start/End: Original strand, 16890260 - 16890442
Alignment:
Q  226 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatattt---aaaagacaactattaaataagggg 322  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||   |||| ||||  | ||||||| |||    
T  16890260 taactttttgaatatttttacaaatataccctcataaaaaattgtgaaacattaaataaactcactaatatttataaaaaaacaaacaataaataaaggg 16890359  T
Q  323 tatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaatatcttttttgaaattt 405  Q
    || | |||| ||  ||  | ||| || ||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||    
T  16890360 tagaaaagtctttgaaacactaactataccttaaaagttgtgatattttcatataaataggaccaatatcatttttgaaattt 16890442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 196 - 408
Target Start/End: Complemental strand, 2207956 - 2207746
Alignment:
Q  196 catcaaaaccaatacgcaaattaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaata 295  Q
    ||||||||||| ||| |  |||| ||||  ||||||||||||||  |||||||||||||||||||||||| ||||||| |||||||||||| | ||||||    
T  2207956 catcaaaaccattacactcattatttagtgtaactttttgaatatttttacaaatataccctcataaaaa-ttgtgaagcattaaatacacccattaata 2207858  T
Q  296 tttaaaagacaactattaaataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaatatcttt 395  Q
    || |||| ||||  ||||||||||||||| | || | ||  | | ||||| | || ||||||| ||||||||||||| ||||||||| |||||| | |||    
T  2207857 ttaaaaatacaaacattaaataaggggtagaaaattctttaacgcaataactgcatcttaaaaattgtgatattttc-tataaataggaccaattttttt 2207759  T
Q  396 tttgaaatttctt 408  Q
    ||| |||||||||    
T  2207758 tttaaaatttctt 2207746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 230 - 382
Target Start/End: Complemental strand, 1445505 - 1445353
Alignment:
Q  230 tttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaa 329  Q
    ||||||||||  |||||||||||||| |||| |||||||||||||||||||||||||||  |||||| ||||||| ||  ||||||| |||| || | ||    
T  1445505 tttttgaatacttttacaaatataccttcattaaaaattgtgaaacattaaatacactcactaatatctaaaagagaaacattaaat-agggatagaaaa 1445407  T
Q  330 gttttctaagaaataa-ttacaccttaaaagttgtgatattttcttataaatag 382  Q
    ||  | |||| ||||| |||||||||||||||||||| ||||||||||||||||    
T  1445406 gtcatttaagcaataacttacaccttaaaagttgtgacattttcttataaatag 1445353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 197 - 388
Target Start/End: Complemental strand, 31659037 - 31658847
Alignment:
Q  197 atcaaaaccaatacgcaaattaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatat 296  Q
    ||||||| |||||| |  ||||||||| |||| ||||||||||  |||||||||||| ||||||||||| || || | |||||||||||  |  || |||    
T  31659037 atcaaaatcaatacactcattaattagtataattttttgaatatttttacaaatatatcctcataaaaa-ttatgcagcattaaatacatccactagtat 31658939  T
Q  297 ttaaaagacaactattaaataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaa 388  Q
    | |||||||||  ||||||||| || || | |||| || |||  ||||| |||| |||||||||||||||||||||||||||||||||||||    
T  31658938 taaaaagacaaacattaaataaaggttaaaaaagtcttttaaacaataactacatcttaaaagttgtgatattttcttataaatagaaccaa 31658847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 226 - 405
Target Start/End: Original strand, 2520125 - 2520302
Alignment:
Q  226 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtat 325  Q
    ||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||| |||  |||||||||||| |  |  |||||||  | ||||     
T  2520125 taactttttgaatatttttacaaatatatcctcataaaaaattgtgaaacattaaatactctcaataatatttaaaaaaggaacattaaat-ggaggtag 2520223  T
Q  326 acaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaatatcttttttgaaattt 405  Q
    | |||| |  |||| ||||| |||| ||||||| |||||| |||||||||||||| |||||||| | |||||| ||||||    
T  2520224 a-aagtctcttaagcaataactacatcttaaaatttgtgacattttcttataaattgaaccaatttttttttttaaattt 2520302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 226 - 375
Target Start/End: Complemental strand, 2152477 - 2152328
Alignment:
Q  226 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatt-taaaagacaactattaaataaggggta 324  Q
    ||||||||||||||  |||| ||||||||||| ||||||||||||||| ||||||||| ||||  |||||||  |||||| ||  |||||||||||||||    
T  2152477 taactttttgaatatttttataaatatacccttataaaaaattgtgaagcattaaatagactcgctaatattaaaaaagataaacattaaataaggggta 2152378  T
Q  325 tacaagttttctaagaaataattacaccttaaaagttgtgatattttctta 375  Q
     | |||| || |||| |||||  ||||||||||| ||||||||||||||||    
T  2152377 gaaaagtcttttaagtaataa-cacaccttaaaaattgtgatattttctta 2152328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 242 - 388
Target Start/End: Complemental strand, 36054956 - 36054810
Alignment:
Q  242 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaa 341  Q
    |||| ||||||||||| || |||||||| |||  ||||||||||  |  ||||||| |||||||||  ||||| ||||||||||| |||| || |||  |    
T  36054956 tttataaatatacccttattaaaaattgggaagtattaaatacatccactaatattaaaaagacaaacattaattaaggggtataaaagtcttttaaaca 36054857  T
Q  342 ataattacaccttaaaagttgtgatattttcttataaatagaaccaa 388  Q
    |||| || |||||||||||||||| |||||||||||||||| |||||    
T  36054856 ataaatataccttaaaagttgtgacattttcttataaataggaccaa 36054810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 225 - 286
Target Start/End: Original strand, 30653622 - 30653683
Alignment:
Q  225 ataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacac 286  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  30653622 ataactttttgaataattttacaaatataccctcataaaaatttgtgaaacattaaatacac 30653683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 383
Target Start/End: Complemental strand, 40694299 - 40694231
Alignment:
Q  315 ataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaataga 383  Q
    |||||||||| | |||| || |||| ||||||||||||| |||||||||||||||||||||||||||||    
T  40694299 ataaggggtagaaaagtcttttaagcaataattacacctaaaaagttgtgatattttcttataaataga 40694231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 247 - 382
Target Start/End: Complemental strand, 29917099 - 29916965
Alignment:
Q  247 aaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaaataat 346  Q
    ||||||||||| | |||||| |||||| ||||||||||||||  ||||||| |||| | || |||||||| || | || | | ||||| |||| ||||||    
T  29917099 aaatataccctta-aaaaaactgtgaagcattaaatacactcactaatattaaaaaaagaagtattaaatgagagatagaaatgttttttaagtaataat 29917001  T
Q  347 tacaccttaaaagttgtgatattttcttataaatag 382  Q
    ||||  ||||||||||| | ||||| ||||||||||    
T  29917000 tacattttaaaagttgtaacatttttttataaatag 29916965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 336 - 383
Target Start/End: Original strand, 40696658 - 40696705
Alignment:
Q  336 taagaaataattacaccttaaaagttgtgatattttcttataaataga 383  Q
    |||| |||||||||| || |||||||||||||||||||||||||||||    
T  40696658 taaggaataattacatctaaaaagttgtgatattttcttataaataga 40696705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 388
Target Start/End: Complemental strand, 11778130 - 11778032
Alignment:
Q  290 ttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaa 388  Q
    |||||||| |||||||||  |||||||||||| ||   |||| || || ||||||  |||| ||||||| ||||||  |||||||||||||||||||||    
T  11778130 ttaatattaaaaagacaaacattaaataagggttaagaaagtcttttacgaaatagatacatcttaaaaattgtgaccttttcttataaatagaaccaa 11778032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 30870752 - 30870790
Alignment:
Q  245 acaaatataccctcataaaaaattgtgaaacattaaata 283  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  30870752 acaaatatacccttataaaaaattgtgaaacattaaata 30870790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 387
Target Start/End: Original strand, 30112527 - 30112578
Alignment:
Q  336 taagaaataattacaccttaaaagttgtgatattttcttataaatagaacca 387  Q
    |||| ||||| |||||||||||| |||||| |||||||||||||||| ||||    
T  30112527 taagcaataactacaccttaaaatttgtgacattttcttataaataggacca 30112578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 285
Target Start/End: Complemental strand, 40314355 - 40314312
Alignment:
Q  242 tttacaaatataccctcataaaaaattgtgaaacattaaataca 285  Q
    |||||||||||| | |||||||||||| ||||||||||||||||    
T  40314355 tttacaaatatatcttcataaaaaattatgaaacattaaataca 40314312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 6396452 - 6396514
Alignment:
Q  259 ataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggg 321  Q
    |||||||  |||||||||||||||||||||  | ||||| ||||||||| | |||||||||||    
T  6396452 ataaaaatctgtgaaacattaaatacactcactgatattaaaaagacaattgttaaataaggg 6396514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 30654264 - 30654310
Alignment:
Q  336 taagaaataattacaccttaaaagttgtgatattttcttataaatag 382  Q
    |||| ||||| ||||| ||||||||||||||||||||||||| ||||    
T  30654264 taagcaataactacactttaaaagttgtgatattttcttatatatag 30654310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 384
Target Start/End: Complemental strand, 43836973 - 43836932
Alignment:
Q  343 taattacaccttaaaagttgtgatattttcttataaatagaa 384  Q
    |||||||||||||||| |||| |||||||||||||| |||||    
T  43836973 taattacaccttaaaaattgtaatattttcttataattagaa 43836932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 353 - 389
Target Start/End: Complemental strand, 35431614 - 35431578
Alignment:
Q  353 ttaaaagttgtgatattttcttataaatagaaccaat 389  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  35431614 ttaaaagttgtgacattttcttataaataggaccaat 35431578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 8e-44; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 196 - 402
Target Start/End: Complemental strand, 41508286 - 41508080
Alignment:
Q  196 catcaaaaccaatacgcaaattaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaata 295  Q
    |||| |||||||||| |  |||||||||  |||||||||||||   |||||||||||||||||||||||||||||||| |||||||||||| |  |||||    
T  41508286 catcgaaaccaatacacttattaattagtgtaactttttgaatgtttttacaaatataccctcataaaaaattgtgaagcattaaatacacccactaata 41508187  T
Q  296 tttaaaagacaactattaaataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaatatcttt 395  Q
    || |||||||||  ||||||||||||||| | |||| || |||| ||||| |||||||||||| ||||||||||||||||||  ||| |||||  | |||    
T  41508186 ttaaaaagacaaacattaaataaggggtaaaaaagtcttttaagcaataactacaccttaaaaattgtgatattttcttatatttaggaccaaatttttt 41508087  T
Q  396 tttgaaa 402  Q
    |||||||    
T  41508086 tttgaaa 41508080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 226 - 388
Target Start/End: Complemental strand, 20949228 - 20949067
Alignment:
Q  226 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtat 325  Q
    ||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||    ||||||| |||||| |   ||||||| |||| ||     
T  20949228 taactttttaaatatttttacaaatataccctcataaaaaattgtgaaacattaaatacacatactaatattcaaaagagagacattaaat-agggataa 20949130  T
Q  326 acaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaa 388  Q
    | || |  | |||| ||||| ||||||||||||||| ||| ||||||||||||||||||||||    
T  20949129 aaaaatcatttaagcaataactacaccttaaaagttatgacattttcttataaatagaaccaa 20949067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 215 - 377
Target Start/End: Complemental strand, 12506875 - 12506713
Alignment:
Q  215 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaa 314  Q
    |||||||||  |||||||||| |||   |||||||||||||||||||||||||||||||||| ||||||||||   | | ||| |||| | |   |||||    
T  12506875 attaattagtgtaactttttgcatactattacaaatataccctcataaaaaattgtgaaacaataaatacacttactgagattaaaaacaaacacattaa 12506776  T
Q  315 ataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttata 377  Q
    ||||||| || | |||| || | |  ||||| ||||||||||||||||| |||||||||||||    
T  12506775 ataagggatagaaaagtcttttgaacaataactacaccttaaaagttgtaatattttcttata 12506713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 215 - 381
Target Start/End: Complemental strand, 7307608 - 7307441
Alignment:
Q  215 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaa 314  Q
    |||||||||  |||| ||||| |||  ||||||||||||| |||||||||||||||||| |||||||||||  |  ||||||| |||| ||||   ||||    
T  7307608 attaattagggtaaccttttgcatatttttacaaatatactctcataaaaaattgtgaagcattaaatacatccactaatattaaaaaaacaaaccttaa 7307509  T
Q  315 ataaggggtat-acaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaata 381  Q
    |||||||| || | || | || |||  ||||| ||| | ||||||||||||| |||||||||||||||    
T  7307508 ataaggggcataaaaaatcttttaaacaataactactctttaaaagttgtgacattttcttataaata 7307441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 377
Target Start/End: Complemental strand, 12485443 - 12485281
Alignment:
Q  215 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaa 314  Q
    |||||||||  |||||||||| |||   |||||||||||||||||||||||||||||||||| ||||||||||   | | ||| |||| | |   |||||    
T  12485443 attaattagtgtaactttttgcatactattacaaatataccctcataaaaaattgtgaaacaataaatacacttactgagattaaaaacaaacacattaa 12485344  T
Q  315 ataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttata 377  Q
    ||||||| || | |||| || | |  ||||| ||||||||||||||||| ||||||| |||||    
T  12485343 ataagggatagaaaagtcttttgaacaataactacaccttaaaagttgtaatattttattata 12485281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 196 - 285
Target Start/End: Original strand, 45072480 - 45072569
Alignment:
Q  196 catcaaaaccaatacgcaaattaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaataca 285  Q
    ||||||||||||||| |  ||||||||| |||| ||||||||||  |||| |||||||| ||||||||||| |||||| |||||||||||    
T  45072480 catcaaaaccaatacactgattaattagtataattttttgaatatttttataaatatactctcataaaaaactgtgaagcattaaataca 45072569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 248 - 377
Target Start/End: Complemental strand, 46341631 - 46341502
Alignment:
Q  248 aatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaaataatt 347  Q
    ||||||||||| |||||| ||||||| |||||||||||| |  || |||  |||| | ||  | |||||||| |||| | |||| || |||| ||||| |    
T  46341631 aatataccctcgtaaaaagttgtgaagcattaaatacacccactattatcaaaaacaaaaacaataaataagtggtagagaagtcttttaagcaataact 46341532  T
Q  348 acaccttaaaagttgtgatattttcttata 377  Q
    ||||||||||||||||||||||||||||||    
T  46341531 acaccttaaaagttgtgatattttcttata 46341502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 371
Target Start/End: Original strand, 6549065 - 6549206
Alignment:
Q  230 tttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaa 329  Q
    ||||||||||  ||||| |||||||| | |||||||||||||||||||||||||||  |  ||   || |||||| ||| ||||| | | || || | ||    
T  6549065 tttttgaatatttttactaatataccttaataaaaaattgtgaaacattaaatacatccactatctttaaaaagaaaaccattaagtgaaggataaaaaa 6549164  T
Q  330 gttttctaagaaataattacaccttaaaagttgtgatatttt 371  Q
     | || |||||||||| || ||||||||||||||||||||||    
T  6549165 atcttttaagaaataactataccttaaaagttgtgatatttt 6549206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 227 - 304
Target Start/End: Complemental strand, 34470213 - 34470136
Alignment:
Q  227 aactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaaga 304  Q
    |||||||||||||  ||||||||||||  | | || |||||||||||| |||||||||||||  ||||||| ||||||    
T  34470213 aactttttgaatatttttacaaatataaacacttacaaaattgtgaaatattaaatacactcactaatattaaaaaga 34470136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 384
Target Start/End: Complemental strand, 2195846 - 2195803
Alignment:
Q  341 aataattacaccttaaaagttgtgatattttcttataaatagaa 384  Q
    ||||| ||||||||||||||| ||||||||||||||| ||||||    
T  2195846 aataactacaccttaaaagttatgatattttcttatatatagaa 2195803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 402
Target Start/End: Original strand, 6549222 - 6549269
Alignment:
Q  355 aaaagttgtgatattttcttataaatagaaccaatatcttttttgaaa 402  Q
    |||||||||||||||||||||||||||| |||||  | ||||||||||    
T  6549222 aaaagttgtgatattttcttataaataggaccaaatttttttttgaaa 6549269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 382
Target Start/End: Original strand, 10599747 - 10599898
Alignment:
Q  231 ttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaag 330  Q
    |||||||| | |||||||||||||||||||||||  |||||||  |||||||| || |  || |||| |||||| ||  ||||||| | || || | |||    
T  10599747 ttttgaatgattttacaaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgaaggttagaaaag 10599846  T
Q  331 ttttctaagaaataattacaccttaaaagttgtgatattttcttataaatag 382  Q
    ||||  ||  ||||| |  |||| |||||||||||  |||||||||||||||    
T  10599847 tttttcaaacaataaatgtacctcaaaagttgtgactttttcttataaatag 10599898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 381
Target Start/End: Complemental strand, 37048647 - 37048576
Alignment:
Q  310 attaaataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaata 381  Q
    ||||||||| ||||| | |||| || |||  ||| | ||||| |||||||||||||||||||||||||||||    
T  37048647 attaaataaagggtagaaaagtcttttaaacaatcactacactttaaaagttgtgatattttcttataaata 37048576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 398
Target Start/End: Original strand, 46101269 - 46101376
Alignment:
Q  291 taatatttaaaagacaactattaaataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaata 390  Q
    ||||||| ||| |||||  ||||||| ||||||| | |||| || | || ||||| |||| |||||||||| ||| |||||||||||||||  ||||||     
T  46101269 taatattaaaatgacaatcattaaatgaggggtagaaaagtcttttgagtaataactacaacttaaaagttatgacattttcttataaataagaccaatt 46101368  T
Q  391 tctttttt 398  Q
    | ||||||    
T  46101369 tttttttt 46101376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 315
Target Start/End: Original strand, 15033299 - 15033385
Alignment:
Q  229 ctttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaa 315  Q
    |||||||||| | ||||||||||||| || ||||||| || ||||  ||| |||| ||||  ||||||| ||||||||| |||||||    
T  15033299 ctttttgaatgattttacaaatatactctaataaaaatttatgaattattgaatatactcactaatattgaaaagacaaatattaaa 15033385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 388
Target Start/End: Complemental strand, 17205160 - 17205123
Alignment:
Q  351 ccttaaaagttgtgatattttcttataaatagaaccaa 388  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  17205160 ccttaaaagttgtgacattttcttataaataggaccaa 17205123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 120
Target Start/End: Complemental strand, 28914908 - 28914875
Alignment:
Q  87 gacaccccacttattcactttaaagatgaatttc 120  Q
    ||||||||||||||||||||||||| ||||||||    
T  28914908 gacaccccacttattcactttaaaggtgaatttc 28914875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 15028844 - 15028808
Alignment:
Q  246 caaatataccctcataaaaaattgtgaaacattaaat 282  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  15028844 caaatataccctcatgaaaaattgtgatacattaaat 15028808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 348 - 380
Target Start/End: Complemental strand, 26195906 - 26195874
Alignment:
Q  348 acaccttaaaagttgtgatattttcttataaat 380  Q
    |||||||||||||||||| ||||||||||||||    
T  26195906 acaccttaaaagttgtgacattttcttataaat 26195874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 7e-35; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 215 - 378
Target Start/End: Complemental strand, 3268965 - 3268802
Alignment:
Q  215 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaa 314  Q
    ||||||||| |||||||||||||||  |||||||||||||||| ||||||| ||||||| | ||||||||||   |||||||| |||| | ||  |||||    
T  3268965 attaattagtataactttttgaatatttttacaaatatacccttataaaaagttgtgaagccttaaatacacctattaatattaaaaacaaaaacattaa 3268866  T
Q  315 ataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataa 378  Q
    |||||||||| | |||| || || | ||||| ||||||||||||||||||||||||||||||||    
T  3268865 ataaggggtagaaaagtcttttaggcaataactacaccttaaaagttgtgatattttcttataa 3268802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 215 - 378
Target Start/End: Complemental strand, 3269524 - 3269361
Alignment:
Q  215 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaa 314  Q
    ||||||||| |||||||||||||||  |||||||||||||||| ||||||| ||||||| | ||||||||||   |||||||| |||| | ||  |||||    
T  3269524 attaattagtataactttttgaatatttttacaaatatacccttataaaaagttgtgaagccttaaatacacctattaatattaaaaacaaaaacattaa 3269425  T
Q  315 ataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataa 378  Q
    |||||||||| | |||| || || | ||||| ||||||||||||||||||||||||||||||||    
T  3269424 ataaggggtagaaaagtcttttaggcaataactacaccttaaaagttgtgatattttcttataa 3269361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 215 - 378
Target Start/End: Complemental strand, 3270083 - 3269920
Alignment:
Q  215 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaa 314  Q
    ||||||||| |||||||||||||||  |||||||||||||||| ||||||| ||||||| | ||||||||||   |||||||| |||| | ||  |||||    
T  3270083 attaattagtataactttttgaatatttttacaaatatacccttataaaaagttgtgaagccttaaatacacctattaatattaaaaacaaaaacattaa 3269984  T
Q  315 ataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataa 378  Q
    |||||||||| | |||| || || | ||||| ||||||||||||||||||||||||||||||||    
T  3269983 ataaggggtagaaaagtcttttaggcaataactacaccttaaaagttgtgatattttcttataa 3269920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 227 - 398
Target Start/End: Complemental strand, 38214268 - 38214097
Alignment:
Q  227 aactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtata 326  Q
    |||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||    ||||||| |||||| || |||||||| |||| ||||    
T  38214268 aactttttgaatatttttacaaatatatcctcataaaaaattgtgaaacattaaatacacatactaatattaaaaagagaagtattaaatgagggatata 38214169  T
Q  327 caagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaatatctttttt 398  Q
     |||| || |||  ||||| |||||||||||||||||||  ||||||||||||| | ||||| || ||||||    
T  38214168 aaagtcttttaaacaataaatacaccttaaaagttgtgaatttttcttataaattggaccaaaatttttttt 38214097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 231 - 380
Target Start/End: Complemental strand, 40504026 - 40503877
Alignment:
Q  231 ttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaag 330  Q
    |||||||||  |||||| ||||||||||||||||| ||||||| |||||||| |||    ||||||| |||||||||  | ||||||||||||||| |||    
T  40504026 ttttgaatatttttacagatataccctcataaaaagttgtgaagcattaaatgcacctactaatattaaaaagacaaacaataaataaggggtataaaag 40503927  T
Q  331 ttttctaagaaataattacaccttaaaagttgtgatattttcttataaat 380  Q
    |||| |||  ||||||||||||||||||||||||| ||||||||||||||    
T  40503926 ttttttaaacaataattacaccttaaaagttgtgacattttcttataaat 40503877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 227 - 389
Target Start/End: Original strand, 39063587 - 39063749
Alignment:
Q  227 aactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtata 326  Q
    |||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||| |  ||||||| |||||| || |||||||| ||   ||||    
T  39063587 aactttttgaatatttttacaaatataacctcataaaaaattgtgaaacattaaatacacacactaatattaaaaagagaagtattaaatgagcaatata 39063686  T
Q  327 caagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaat 389  Q
     |||| || |||  ||||| |||||||||||||||||||  ||||||||||||| | ||||||    
T  39063687 aaagtcttttaaacaataaatacaccttaaaagttgtgaatttttcttataaattggaccaat 39063749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 215 - 382
Target Start/End: Complemental strand, 40442885 - 40442718
Alignment:
Q  215 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaa 314  Q
    ||||||||| ||||  |||||||||  |||| | ||||||||| ||||||| ||||||| |||||||| |||    ||||||| |||||| ||  | |||    
T  40442885 attaattagtataatcttttgaatatttttatagatatacccttataaaaagttgtgaagcattaaatgcacctactaatattaaaaagataaacaataa 40442786  T
Q  315 ataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatag 382  Q
    |||||||||||| ||||||| |||  ||||||||||||||||||||||||| ||||||||||||||||    
T  40442785 ataaggggtataaaagttttttaaacaataattacaccttaaaagttgtgacattttcttataaatag 40442718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 215 - 427
Target Start/End: Complemental strand, 38496640 - 38496428
Alignment:
Q  215 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaa 314  Q
    |||||||||  ||||||||||||||  |||||||||||||||| |||||||  || ||||||||||||||||    ||||||| |||| ||||   ||||    
T  38496640 attaattagtgtaactttttgaatatttttacaaatataccctgataaaaatgtgcgaaacattaaatacacctactaatattaaaaatacaaacgttaa 38496541  T
Q  315 ataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaatatcttttttgaaatttcttttatgc 414  Q
    |||||||||| | | || || |||  ||||| || ||||||||| || ||| |||||||||||||||| || || || |||||||||| || | ||||      
T  38496540 ataaggggtagaaaggtcttttaaacaataactataccttaaaaattctgacattttcttataaataggactaacatattttttgaaaattttcttatat 38496441  T
Q  415 ataagatcggagg 427  Q
    ||| |||||||||    
T  38496440 ataggatcggagg 38496428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 227 - 402
Target Start/End: Complemental strand, 19286035 - 19285860
Alignment:
Q  227 aactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtata 326  Q
    |||||||| ||||| |||||||||||| ||  ||| ||| ||||||| ||||||||||| ||  ||||||| ||||||||| |||||||| | || ||||    
T  19286035 aactttttaaataattttacaaatatatccctatagaaagttgtgaaccattaaatacattcactaatattgaaaagacaaatattaaatgaaggatata 19285936  T
Q  327 caagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaatatcttttttgaaa 402  Q
     |||| || || | ||||| |||||||||||| |||||| | || ||||||||||| |||||  | ||||||||||    
T  19285935 aaagtcttttatgcaataactacaccttaaaacttgtgacaattacttataaataggaccaaatttttttttgaaa 19285860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 215 - 398
Target Start/End: Complemental strand, 16781428 - 16781246
Alignment:
Q  215 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaa 314  Q
    |||||||||  ||| ||||||||||| | ||||||||||||||||| |||||| ||||||||||||||||||    |||||||  ||||||||  |||||    
T  16781428 attaattagtctaattttttgaataattatacaaatataccctcattaaaaatggtgaaacattaaatacacctactaatattacaaagacaaacattaa 16781329  T
Q  315 ataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaatatctttttt 398  Q
     ||||| ||| | |||| || |||  | |||||| ||||| ||||||||||  ||||||||||||||  |||||| | ||||||    
T  16781328 ctaaggcgtagaaaagtcttttaaacattaattatacctt-aaagttgtgactttttcttataaatatgaccaatgtttttttt 16781246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 227 - 398
Target Start/End: Complemental strand, 40664390 - 40664218
Alignment:
Q  227 aactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatt-taaaagacaactattaaataaggggtat 325  Q
    |||||||||||||   |||||||||||||||| ||||||||||||||||||||||||||| |   ||| ||  |||||| ||  ||||||| |||| |||    
T  40664390 aactttttgaatattcttacaaatataccctcgtaaaaaattgtgaaacattaaatacacacaccaatgttaaaaaagagaagcattaaatgagggatat 40664291  T
Q  326 acaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaatatctttttt 398  Q
    | |||| || |||  ||||| ||||| |||| |||||||| |||||||||| ||| | |||||| | ||||||    
T  40664290 aaaagtcttttaaataataaatacactttaagagttgtgaaattttcttatcaattggaccaatttttttttt 40664218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 227 - 304
Target Start/End: Complemental strand, 21794992 - 21794914
Alignment:
Q  227 aactttttgaataagtttacaaatataccctcataa-aaaattgtgaaacattaaatacactctttaatatttaaaaga 304  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||| |  ||||||| ||||||    
T  21794992 aactttttgaatatttttacaaatataccctcataaaaaaattgtgaaacattaaatacacacactaatattaaaaaga 21794914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 324
Target Start/End: Original strand, 4015769 - 4015878
Alignment:
Q  215 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaa 314  Q
    |||||||||  ||||||||||||||| | || |||||||||||| | ||||||| ||||||||||||| |||    |||||||  ||||||||  |||||    
T  4015769 attaattagtctaactttttgaataattatataaatataccctcgttaaaaattatgaaacattaaatgcacctactaatattacaaagacaaacattaa 4015868  T
Q  315 ataaggggta 324  Q
     |||||||||    
T  4015869 ctaaggggta 4015878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 242 - 382
Target Start/End: Original strand, 14200375 - 14200514
Alignment:
Q  242 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaaga-caactattaaataaggggtatacaagttttctaaga 340  Q
    |||||||||||||||||||||||| |||||||  |||||||| ||||  ||||||| |||||| |||| ||||||| |||| || | |||| || |||      
T  14200375 tttacaaatataccctcataaaaatttgtgaagtattaaatatactcactaatattgaaaagatcaac-attaaatgagggttaaaaaagtcttttaaat 14200473  T
Q  341 aataattacaccttaaaagttgtgatattttcttataaatag 382  Q
    ||||| |  | ||||||||||||||  |||||||||||||||    
T  14200474 aataaatgtatcttaaaagttgtga-cttttcttataaatag 14200514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 351 - 402
Target Start/End: Original strand, 3711954 - 3712005
Alignment:
Q  351 ccttaaaagttgtgatattttcttataaatagaaccaatatcttttttgaaa 402  Q
    ||||||||||||||| ||||||||||||||||||||||  | ||||||||||    
T  3711954 ccttaaaagttgtgacattttcttataaatagaaccaaatttttttttgaaa 3712005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 242 - 321
Target Start/End: Complemental strand, 32872481 - 32872402
Alignment:
Q  242 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggg 321  Q
    ||||||||||||||||||||||||||||||||  |||||||| || |  ||||||| ||| |||||  ||||||| ||||    
T  32872481 tttacaaatataccctcataaaaaattgtgaagtattaaatatacccactaatattaaaaggacaaacattaaattaggg 32872402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 34309352 - 34309310
Alignment:
Q  242 tttacaaatataccctcataaaaaattgtgaaacattaaatac 284  Q
    |||||||||||||||||||||||| |||||||  |||||||||    
T  34309352 tttacaaatataccctcataaaaatttgtgaagtattaaatac 34309310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 405
Target Start/End: Complemental strand, 2761584 - 2761521
Alignment:
Q  341 aataattacaccttaaaagttgtgatatttt--cttataaatagaaccaatatcttttttgaaattt 405  Q
    ||||||||||| |||||||||||||||||||   |||||||||| ||||||   |||||||||||||    
T  2761584 aataattacactttaaaagttgtgatatttttatttataaataggaccaat---ttttttgaaattt 2761521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 277
Target Start/End: Complemental strand, 2761680 - 2761616
Alignment:
Q  215 attaattagcataactttttgaataagtttacaaatatac--cctcataaaaaattgtgaaacat 277  Q
    |||||||||  ||||||||||||||  |||| |||||||   |||||||||||||||||||||||    
T  2761680 attaattagtgtaactttttgaatatttttataaatatatatcctcataaaaaattgtgaaacat 2761616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 284
Target Start/End: Original strand, 44883181 - 44883218
Alignment:
Q  247 aaatataccctcataaaaaattgtgaaacattaaatac 284  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  44883181 aaatatacccttataaaaagttgtgaaacattaaatac 44883218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 358
Target Start/End: Complemental strand, 31405097 - 31404969
Alignment:
Q  230 tttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaa 329  Q
    ||||||||||  |||||||||||| ||||||| ||| || ||||  |||||||| |  |  ||||||| ||||||||| |||||||| |||| || | ||    
T  31405097 tttttgaatatttttacaaatatatcctcatagaaatttatgaagtattaaatatatgcactaatattaaaaagacaaatattaaatgagggttagaaaa 31404998  T
Q  330 gttttctaagaaataattacaccttaaaa 358  Q
    || || ||| |||||| |  |||||||||    
T  31404997 gtcttttaaaaaataaatgtaccttaaaa 31404969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 341 - 381
Target Start/End: Original strand, 44883270 - 44883310
Alignment:
Q  341 aataattacaccttaaaagttgtgatattttcttataaata 381  Q
    ||||| || ||||||||| ||||||||||||||||||||||    
T  44883270 aataaatataccttaaaaattgtgatattttcttataaata 44883310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 196 - 388
Target Start/End: Complemental strand, 154526 - 154334
Alignment:
Q  196 catcaaaaccaatacgcaaattaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaata 295  Q
    ||||||||||||||| |  |||||||||  |||||| |||||||  |||||||| || ||||||||||||| |||||| |||||||||||| |   ||||    
T  154526 catcaaaaccaatacactcattaattagtgtaacttgttgaatatttttacaaacatgccctcataaaaaactgtgaagcattaaatacacccaccaata 154427  T
Q  296 tttaaaagacaactattaaataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaa 388  Q
    || |||||||||  |||||||||  |||| | | || || |||  ||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  154426 ttaaaaagacaaacattaaataaaaggtaaaaaggtcttttaaacaataactacaccttaaaagttgtaatattttcttataaatagaaccaa 154334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 227 - 382
Target Start/End: Original strand, 40344925 - 40345078
Alignment:
Q  227 aactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtata 326  Q
    |||||||||||||  |||||||||||||||| ||||||||||||||| |||||||||| | ||  |||||| ||||||||| |||||||| |||||||||    
T  40344925 aactttttgaatatttttacaaatatacccttataaaaaattgtgaaccattaaatactcact--aatattaaaaagacaaatattaaatgaggggtata 40345022  T
Q  327 caagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatag 382  Q
     |||| |  |||| ||| | ||||||||||||||||||| ||||||||||| ||||    
T  40345023 aaagtctcttaagcaatgactacaccttaaaagttgtgacattttcttatagatag 40345078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 226 - 402
Target Start/End: Complemental strand, 35455460 - 35455288
Alignment:
Q  226 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtat 325  Q
    ||||||||||||||  | |||||||||||  ||||||||||||||||||||||||||||||||  |||||||| ||| | ||  ||||||| |||| ||     
T  35455460 taactttttgaatatttctacaaatatac--tcataaaaaattgtgaaacattaaatacactcactaatattt-aaatataaacattaaat-agggatag 35455365  T
Q  326 acaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaatatcttttttgaaa 402  Q
    | ||||  | |||| ||||||||||||||||||||||||| |||||||||||||||  |||||| | ||||||||||    
T  35455364 aaaagtcatttaagcaataattacaccttaaaagttgtgacattttcttataaataagaccaattttttttttgaaa 35455288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 226 - 388
Target Start/End: Complemental strand, 45261517 - 45261358
Alignment:
Q  226 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtat 325  Q
    |||||||||||| |  ||||||||||||||||||  ||||||||||||||||||||||||| |  |||||||||||||| ||  |||||||| ||| ||     
T  45261517 taactttttgaacatttttacaaatataccctca--aaaaattgtgaaacattaaatacacccactaatatttaaaagagaaacattaaata-gggatag 45261421  T
Q  326 acaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaa 388  Q
    | ||||  | |||| ||||| |||| |||||||||||||| |||||||||||||||| |||||    
T  45261420 aaaagtcatttaagcaataactacagcttaaaagttgtgacattttcttataaataggaccaa 45261358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 226 - 387
Target Start/End: Original strand, 17003569 - 17003729
Alignment:
Q  226 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtat 325  Q
    ||||||||||||||  ||||||||||||||||||| |||||||||||||||||||| |||| |  |||||||||||||| ||  ||||||| |||| ||     
T  17003569 taactttttgaatatttttacaaatataccctcat-aaaaattgtgaaacattaaacacacccactaatatttaaaagagaaacattaaat-agggataa 17003666  T
Q  326 acaagttttctaagaaataattacaccttaaaagttgtgata-ttttcttataaatagaacca 387  Q
    | ||||  | |||| ||||| ||||||||||||||||||| | |||| |||||||||| ||||    
T  17003667 aaaagtcatttaagcaataactacaccttaaaagttgtgacattttttttataaataggacca 17003729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 227 - 402
Target Start/End: Original strand, 8825352 - 8825524
Alignment:
Q  227 aactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtata 326  Q
    |||||||| ||||  |||| ||||||||||| ||||||||||||| | |||||||||||||| |||||| |||||| | |   ||||||| | || || |    
T  8825352 aactttttaaatatttttataaatatacccttataaaaaattgtgtagcattaaatacactcattaata-ttaaaataaagtcattaaatgaaggataga 8825450  T
Q  327 caagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaatatcttttttgaaa 402  Q
     |||| || |||| ||||| |||||||||||| |||||| |||||||||||||||| |||||| | ||||||||||    
T  8825451 aaagtcttttaagcaataactacaccttaaaa-ttgtgacattttcttataaataggaccaat-ttttttttgaaa 8825524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 226 - 362
Target Start/End: Complemental strand, 36659340 - 36659206
Alignment:
Q  226 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtat 325  Q
    ||||||||||||||  ||||||| |||||||| |||||||||| ||||||||||||||||||| |||| |||  ||| | |||||||||||| ||| ||     
T  36659340 taactttttgaatatttttacaagtataccctaataaaaaattatgaaacattaaatacactcattaacatt--aaaaaaaactattaaataggggataa 36659243  T
Q  326 acaagttttctaagaaataattacaccttaaaagttg 362  Q
    | |||| |  |||| | ||| ||||||||||||||||    
T  36659242 aaaagtctcttaagcagtaactacaccttaaaagttg 36659206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 242 - 388
Target Start/End: Original strand, 46918471 - 46918616
Alignment:
Q  242 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaa 341  Q
    |||||||||||||||| ||| || ||| |||||||||||||||| || |||||||| ||||||||   ||||||| | || || | |||| || |||| |    
T  46918471 tttacaaatatacccttatagaatattttgaaacattaaatacattcattaatattaaaaagacagacattaaatgaaggataaaaaagtcttttaagca 46918570  T
Q  342 ataattacaccttaaaagttgtgatattttcttataaatagaaccaa 388  Q
    |||| ||  |||||||| |||||| |||||||||||||||| |||||    
T  46918571 ataacta-tccttaaaaattgtgacattttcttataaataggaccaa 46918616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 226 - 425
Target Start/End: Original strand, 43320129 - 43320322
Alignment:
Q  226 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtat 325  Q
    ||||||||||||||  |||||||||| ||||| ||||||||| | ||| ||||||||||| ||  |||      ||||||||  ||| |||| ||| ||     
T  43320129 taactttttgaatatttttacaaatacacccttataaaaaatcgcgaagcattaaatacattcactaa------aaagacaaacattgaataggggctag 43320222  T
Q  326 acaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaatatcttttttgaaatttcttttatgcataagatcgga 425  Q
    | |||| || |||  |||||  |||||||||||||||||| ||||||||||||||||  ||||  | |||||||||| || | |||| ||||||||||||    
T  43320223 aaaagtcttttaaacaataaccacaccttaaaagttgtgacattttcttataaataggtccaaacttttttttgaaaattttattatacataagatcgga 43320322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 291 - 402
Target Start/End: Original strand, 32211846 - 32211957
Alignment:
Q  291 taatatttaaaagacaactattaaataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaata 390  Q
    ||||||| |||||||||  ||||||||| ||||| | |||| || |||  ||||| ||||||||||||||||||| |||||||||||||||  ||||| |    
T  32211846 taatattaaaaagacaaacattaaataacgggtagaaaagtcttttaaacaataactacaccttaaaagttgtgaaattttcttataaataagaccaaca 32211945  T
Q  391 tcttttttgaaa 402  Q
      ||||||||||    
T  32211946 atttttttgaaa 32211957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 264 - 380
Target Start/End: Original strand, 25295082 - 25295198
Alignment:
Q  264 aaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaaataattacaccttaaaagttgt 363  Q
    ||||||||||||||| |||| || |  ||||||| |||||| ||  ||||||| |||| || | |||| || |||  |||||||||||||||||||||||    
T  25295082 aaattgtgaaacatttaataaacccactaatattaaaaagagaagcattaaatgagggataaaaaagtcttttaaacaataattacaccttaaaagttgt 25295181  T
Q  364 gatattttcttataaat 380  Q
     | ||||||||||||||    
T  25295182 aacattttcttataaat 25295198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 226 - 283
Target Start/End: Original strand, 42279228 - 42279285
Alignment:
Q  226 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaata 283  Q
    ||||||||| ||||  |||||||||||||||||||||||| || ||||| ||||||||    
T  42279228 taacttttttaatatttttacaaatataccctcataaaaatttatgaaatattaaata 42279285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 49983848 - 49983783
Alignment:
Q  242 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaa 307  Q
    |||||||||||||||||||||||| |||||||  |||||||| || |  ||||||| |||||||||    
T  49983848 tttacaaatataccctcataaaaatttgtgaagtattaaatatacccactaatattaaaaagacaa 49983783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 382
Target Start/End: Original strand, 18085656 - 18085696
Alignment:
Q  341 aataattacaccttaaaagttgtgatattttcttataaatag 382  Q
    ||||| |||||||||||| |||||||||||||||||||||||    
T  18085656 aataactacaccttaaaa-ttgtgatattttcttataaatag 18085696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 24650261 - 24650196
Alignment:
Q  242 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaa 307  Q
    |||||||||||||  | |||||||||||||||| ||||||||  |||  ||||||| |||||||||    
T  24650261 tttacaaatatacttttataaaaaattgtgaaatattaaatatgctcactaatattaaaaagacaa 24650196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 27636771 - 27636804
Alignment:
Q  86 agacaccccacttattcactttaaagatgaattt 119  Q
    ||||||| ||||||||||||||||||||||||||    
T  27636771 agacacctcacttattcactttaaagatgaattt 27636804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 27639809 - 27639842
Alignment:
Q  86 agacaccccacttattcactttaaagatgaattt 119  Q
    ||||||||||||||||||| ||||||||||||||    
T  27639809 agacaccccacttattcaccttaaagatgaattt 27639842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 27828598 - 27828545
Alignment:
Q  230 tttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaata 283  Q
    ||||||||||  |||||||||||||| ||||||||| |||||||| | ||||||    
T  27828598 tttttgaatatttttacaaatataccttcataaaaatttgtgaaatactaaata 27828545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 215 - 280
Target Start/End: Complemental strand, 28695713 - 28695646
Alignment:
Q  215 attaattagcataactttttgaataagtttacaaatat--accctcataaaaaattgtgaaacattaa 280  Q
    |||||||||  ||||||||||||||  |||||||||||  || || ||||||| ||||||||||||||    
T  28695713 attaattagtgtaactttttgaatatttttacaaatatacacgcttataaaaagttgtgaaacattaa 28695646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 388
Target Start/End: Complemental strand, 38854656 - 38854608
Alignment:
Q  340 aaataattacaccttaaaagttgtgatattttcttataaatagaaccaa 388  Q
    |||||| || || |||||||||||||  |||||||||||||||||||||    
T  38854656 aaataaatatactttaaaagttgtgaatttttcttataaatagaaccaa 38854608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 43598863 - 43598895
Alignment:
Q  88 acaccccacttattcactttaaagatgaatttc 120  Q
    ||||||||||||||||||||||| |||||||||    
T  43598863 acaccccacttattcactttaaaaatgaatttc 43598895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 52427083 - 52427139
Alignment:
Q  230 tttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacac 286  Q
    |||||||||| ||||| || |||| ||||||||||| |||| ||| |||||||||||    
T  52427083 tttttgaatatgtttataattatatcctcataaaaagttgtaaaatattaaatacac 52427139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 199 - 365
Target Start/End: Original strand, 31707317 - 31707480
Alignment:
Q  199 caaaaccaatacgcaaattaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatattt 298  Q
    |||||||||||| |  |||||||||  ||||||||||||||  |||||||||||||||||||||||| || |||| |||   |||||| |  |||||||     
T  31707317 caaaaccaatacactcattaattagtgtaactttttgaatatttttacaaatataccctcataaaaatttatgaagcat---atacacccactaatatta 31707413  T
Q  299 aaaagacaactattaaataaggggtatacaagttttctaagaaataattacaccttaaaagttgtga 365  Q
    |||||||||  ||||||||||||||| | |||| ||||||| ||||| |||||||||||||||||||    
T  31707414 aaaagacaaacattaaataaggggtagaaaagtcttctaagcaataactacaccttaaaagttgtga 31707480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 242 - 388
Target Start/End: Complemental strand, 18838891 - 18838746
Alignment:
Q  242 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaa 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |  ||||||| |||||| ||  ||||||| | ||||| | |||| || |||  |    
T  18838891 tttacaaatataccctcataaaaaattgtgaaacattaaatacacccactaatattaaaaagataatcattaaatga-gggtagaaaagtcttttaaaca 18838793  T
Q  342 ataattacaccttaaaagttgtgatattttcttataaatagaaccaa 388  Q
    ||||||| |||||||||||| ||| ||||||| ||||||||||||||    
T  18838792 ataattataccttaaaagttatgacattttctcataaatagaaccaa 18838746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 226 - 387
Target Start/End: Original strand, 47231565 - 47231724
Alignment:
Q  226 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtat 325  Q
    ||||||||||||||  ||||||| |||||| ||||||||| ||||||| |||||||||||||  ||||||||  ||||||||| |||||||||| ||||     
T  47231565 taactttttgaatatttttacaattatacc-tcataaaaagttgtgaatcattaaatacacttgttaatattataaagacaac-attaaataagaggtaa 47231662  T
Q  326 acaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaacca 387  Q
    | || | || |||  ||||| || | |||||||||  ||| ||||||||||||||| |||||    
T  47231663 aaaaatcttttaaacaataaatatatcttaaaagtattgacattttcttataaataaaacca 47231724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 225 - 286
Target Start/End: Original strand, 33721602 - 33721663
Alignment:
Q  225 ataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacac 286  Q
    |||||||||| ||||| |||||||| |||| |||||||||||||||||||||||||||||||    
T  33721602 ataactttttcaataattttacaaacatactctcataaaaaattgtgaaacattaaatacac 33721663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 226 - 372
Target Start/End: Complemental strand, 30615272 - 30615129
Alignment:
Q  226 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactct-ttaatatttaaaagacaactattaaataaggggta 324  Q
    ||||||||| ||||  |||||||||| ||| | |||||||||| |||||||||||||||| |||  ||||||| |||||||||||||||||| |  |  |    
T  30615272 taactttttaaatatttttacaaatacacctttataaaaaattatgaaacattaaataca-tctactaatattaaaaagacaactattaaatgaatg--a 30615176  T
Q  325 tacaagttttctaagaaataattacaccttaaaagttgtgatattttc 372  Q
    || || | || |||| |||||||||| |||||||||||||||||||||    
T  30615175 taaaaatcttttaagtaataattaca-cttaaaagttgtgatattttc 30615129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 242 - 388
Target Start/End: Complemental strand, 27032278 - 27032132
Alignment:
Q  242 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaa 341  Q
    |||||||||||||||| ||| ||| |||||||| |||||||||| |   ||||||| ||||  |||  |||| || || |||| ||| || || |||| |    
T  27032278 tttacaaatatacccttatagaaagttgtgaaatattaaatacatttactaatattaaaaaagcaatcattacatgagaggtagacaggtcttttaagca 27032179  T
Q  342 ataattacaccttaaaagttgtgatattttcttataaatagaaccaa 388  Q
    || || ||||||||| | ||||||||||||| |||||||||||||||    
T  27032178 attatcacaccttaagaattgtgatattttcctataaatagaaccaa 27032132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 242 - 314
Target Start/End: Complemental strand, 42183601 - 42183528
Alignment:
Q  242 tttacaaatataccctcataaaaaa-ttgtgaaacattaaatacactctttaatatttaaaagacaactattaa 314  Q
    |||||||||||| |||||||||||| ||||||| ||||||||| || | |||||||| ||||||||||||||||    
T  42183601 tttacaaatatatcctcataaaaaaattgtgaagcattaaataaacacattaatattaaaaagacaactattaa 42183528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 402
Target Start/End: Complemental strand, 34319682 - 34319532
Alignment:
Q  251 ataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaaataattaca 350  Q
    |||||||||||||||||||| |||||||||||| |  | | |||||| |||||| ||  |||||||||||| || | ||| ||| |||  |||||   ||    
T  34319682 ataccctcataaaaaattgtaaaacattaaatatatccataaatattaaaaagaaaaacattaaataaggg-tagaaaagctttttaaacaataaccgca 34319584  T
Q  351 ccttaaaagttgtgatattttcttataaatagaaccaatatcttttttgaaa 402  Q
    | |||||| |||||| |||||||||||||||| |||||  | ||||||||||    
T  34319583 ctttaaaaattgtgacattttcttataaataggaccaagtttttttttgaaa 34319532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 215 - 285
Target Start/End: Original strand, 32599740 - 32599809
Alignment:
Q  215 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaataca 285  Q
    ||||||||| | |||||||| ||||| |||| ||||||||| ||||||||||||||||| |||||||||||    
T  32599740 attaattagtaaaacttttt-aataattttataaatataccttcataaaaaattgtgaagcattaaataca 32599809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 232 - 283
Target Start/End: Original strand, 42312399 - 42312450
Alignment:
Q  232 tttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaata 283  Q
    ||||||||  |||||||||||||||||||||||||||||||| ||| |||||    
T  42312399 tttgaatatttttacaaatataccctcataaaaaattgtgaagcataaaata 42312450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 16572298 - 16572252
Alignment:
Q  336 taagaaataattacaccttaaaagttgtgatattttcttataaatag 382  Q
    |||| ||||| ||||||||||||||||||| ||||||||||||||||    
T  16572298 taagcaataactacaccttaaaagttgtgacattttcttataaatag 16572252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 381
Target Start/End: Original strand, 25376852 - 25376991
Alignment:
Q  242 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaaga-caactattaaataaggggtatacaagttttctaaga 340  Q
    ||||||||||||||||| |||||| |||||||  |||||||| ||||   |||||| |||||| |||| ||||||| |||| || | |||| || |||      
T  25376852 tttacaaatataccctcttaaaaatttgtgaagtattaaatatactcacaaatattgaaaagatcaac-attaaatgagggttagaaaagtcttttaaac 25376950  T
Q  341 aataattacaccttaaaagttgtgatattttcttataaata 381  Q
    |||||||| |||||||||  |||||  ||||||| ||||||    
T  25376951 aataattataccttaaaatctgtgactttttcttgtaaata 25376991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 286
Target Start/End: Original strand, 44720574 - 44720634
Alignment:
Q  226 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacac 286  Q
    |||| |||||||||  |||| ||||||| |||||||||||||||  |||||||||||||||    
T  44720574 taacattttgaatatttttataaatatatcctcataaaaaattgcaaaacattaaatacac 44720634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 341 - 412
Target Start/End: Original strand, 44884457 - 44884530
Alignment:
Q  341 aataattacaccttaaaa--gttgtgatattttcttataaatagaaccaatatcttttttgaaatttcttttat 412  Q
    ||||| ||||||||||||  ||||||| ||||||||||| |||| ||||| | |||||||||| ||| ||||||    
T  44884457 aataactacaccttaaaaaagttgtgacattttcttatatataggaccaaaaacttttttgaattttattttat 44884530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 398
Target Start/End: Complemental strand, 54863956 - 54863908
Alignment:
Q  350 accttaaaagttgtgatattttcttataaatagaaccaatatctttttt 398  Q
    ||||||||||||||||  ||||||||||||||| |||||| | ||||||    
T  54863956 accttaaaagttgtgactttttcttataaataggaccaatttttttttt 54863908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 341 - 377
Target Start/End: Complemental strand, 56093632 - 56093596
Alignment:
Q  341 aataattacaccttaaaagttgtgatattttcttata 377  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  56093632 aataattacaccttaaaagttatgatatttttttata 56093596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 242 - 378
Target Start/End: Original strand, 39150189 - 39150324
Alignment:
Q  242 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaa 341  Q
    |||||||||||||||||||||||  ||||||| |||||||||||||| |||||||| |||| | ||  ||||||||||||||| | |||| || |||| |    
T  39150189 tttacaaatataccctcataaaag-ttgtgaagcattaaatacactcattaatattaaaaacaaaaacattaaataaggggtagaaaagtcttttaagca 39150287  T
Q  342 ataattacaccttaaaagttgtgatattttcttataa 378  Q
    |||| |||||||||||||| |||||||||||||||||    
T  39150288 ataactacaccttaaaagtagtgatattttcttataa 39150324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 230 - 382
Target Start/End: Complemental strand, 46443852 - 46443702
Alignment:
Q  230 tttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaa 329  Q
    ||||||||||  ||||||||||||||| |||||||| ||||||||||||| ||||| ||  ||| ||| |||||| |||||| |||| |||| || | ||    
T  46443852 tttttgaatatttttacaaatatacccacataaaaa-ttgtgaaacattatatacattcactaacattaaaaagagaactat-aaatgagggataaaaaa 46443755  T
Q  330 gttttctaagaaataattacaccttaaaagttgtgatattttcttataaatag 382  Q
    ||||| |||| |||||||||||||||||||||||||  |||||||||||||||    
T  46443754 gttttttaagtaataattacaccttaaaagttgtgacgttttcttataaatag 46443702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 226 - 382
Target Start/End: Original strand, 9851805 - 9851960
Alignment:
Q  226 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtat 325  Q
    ||||||||||||||  |||||||||||||| | |||||| | |||||||||||||||| || |  |||||||||||||| ||  ||||||| |||| ||     
T  9851805 taactttttgaatatttttacaaatatacctttataaaatactgtgaaacattaaatatacccactaatatttaaaagagaaacattaaat-agggataa 9851903  T
Q  326 acaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatag 382  Q
    | | ||  | |||| ||||| ||||| ||||||||||||| ||||||||||||||||    
T  9851904 aaaggtcatttaagcaataactacactttaaaagttgtgacattttcttataaatag 9851960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 230 - 388
Target Start/End: Original strand, 28165121 - 28165279
Alignment:
Q  230 tttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactct-ttaatatttaaaagacaactattaaataaggggtataca 328  Q
    ||||||||||  |||||||||||||||| ||||||||||||||||||||||||||| |||   |||||| |||||| ||  | | ||| ||||||| | |    
T  28165121 tttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaataca-tctaccaatattaaaaagataaagacttaatgaggggtaaaaa 28165219  T
Q  329 agttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaa 388  Q
    | | || |||| ||||| || ||||| |||||||||| ||||| ||||||||||||||||    
T  28165220 aatcttttaagcaataactatacctttaaagttgtgacattttattataaatagaaccaa 28165279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 225 - 389
Target Start/End: Original strand, 31181042 - 31181207
Alignment:
Q  225 ataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatt-taaaagacaactattaaataaggggt 323  Q
    |||||||||||||||  ||||||| |||||||| ||| ||||||||||||||||||||||||||  |||||||  |||| | ||  ||||||| | | ||    
T  31181042 ataactttttgaatatttttacaagtatacccttatagaaaattgtgaaacattaaatacactcgctaatattaaaaaaaaaaaacattaaatgaagtgt 31181141  T
Q  324 atacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaat 389  Q
    | | |||| || |||  ||||| || |  ||||||||||||| ||||||||||||||| |||||||    
T  31181142 aaaaaagtcttttaaacaataactataagttaaaagttgtgacattttcttataaataaaaccaat 31181207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 230 - 371
Target Start/End: Original strand, 42454868 - 42455009
Alignment:
Q  230 tttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaa 329  Q
    ||||||||||  |||| |||||||||||||||||||||| |||| ||||||||||||||  ||||||| |||||||||   ||||||||  || ||| ||    
T  42454868 tttttgaatatttttataaatataccctcataaaaaattatgaagcattaaatacactcactaatattaaaaagacaaacgttaaataaaaggcataaaa 42454967  T
Q  330 gttttctaagaaataattacaccttaaaagttgtgatatttt 371  Q
    || || |||  | | | ||||||||||||||||||| |||||    
T  42454968 gtcttttaaacattcactacaccttaaaagttgtgacatttt 42455009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 242 - 402
Target Start/End: Original strand, 17971370 - 17971530
Alignment:
Q  242 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaa 341  Q
    ||||||||||||||||| |||||| |||||||  |||||||| || |  ||||||| ||||||| |  ||||||| |||| || | |||| || |||  |    
T  17971370 tttacaaatataccctcttaaaaatttgtgaagtattaaatatacacactaatattgaaaagaccaacattaaatgagggttagaaaagtcttttaaaca 17971469  T
Q  342 ataattacaccttaaaagttgtgatattttcttataaatagaaccaatatcttttttgaaa 402  Q
    |||| || ||||||||||||||||  ||||||||||||||| ||||| |  ||||||||||    
T  17971470 ataaatataccttaaaagttgtgactttttcttataaataggaccaaaacgttttttgaaa 17971530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 242 - 389
Target Start/End: Complemental strand, 3574868 - 3574719
Alignment:
Q  242 tttacaaatataccctcataaaaaattgtgaaacattaaatacactct--ttaatatttaaaagacaactattaaataaggggtatacaagttttctaag 339  Q
    |||| |||||||| || |||||||||||||||| |||||||||| ||   |||||||| ||| || ||  ||||||| ||||||| |||| |||| |||     
T  3574868 tttataaatatactcttataaaaaattgtgaaatattaaatacattcaaattaatattaaaatgataaacattaaatgaggggtagacaaattttttaaa 3574769  T
Q  340 aaataattacaccttaaaagttgtgatattttcttataaatagaaccaat 389  Q
     ||||| ||||  | ||||||||||| |||||||||||||||| ||||||    
T  3574768 caataactacatttgaaaagttgtgacattttcttataaataggaccaat 3574719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 382
Target Start/End: Complemental strand, 31152589 - 31152435
Alignment:
Q  226 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtat 325  Q
    ||||||||||||||  ||||||||||||| ||||||||||  |||||||||||||||||  ||  ||||| |||||||| ||  ||||||| |||||||     
T  31152589 taactttttgaatatttttacaaatatacgctcataaaaa--tgtgaaacattaaatacgttcactaata-ttaaaagagaaacattaaatgaggggtag 31152493  T
Q  326 acaagttttctaagaaataattacaccttaaaagttgtgatattt-tcttataaatag 382  Q
      |||| || |||| |||||  ||| ||||||||||||||||||| | ||||||||||    
T  31152492 caaagtcttttaagcaataacgacatcttaaaagttgtgatatttcttttataaatag 31152435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 242 - 402
Target Start/End: Original strand, 36437207 - 36437367
Alignment:
Q  242 tttacaaatataccctcataaaaaattgtgaaacattaaataca-ctctttaatatttaaaagacaactattaaataaggggtatacaagttttctaaga 340  Q
    |||||||||||||||| ||| ||  ||||||||||||||||||| | |  ||||||| ||||||||   ||||||| |||| || | |||| || ||||     
T  36437207 tttacaaatatacccttatagaatgttgtgaaacattaaatacatcccactaatattaaaaagacagacattaaatgagggataaaaaagtcttttaagc 36437306  T
Q  341 aataattacaccttaaaagttgtgatattttcttataaatagaaccaatatcttttttgaaa 402  Q
    ||||| ||  ||||||||||||||| |||||||||||||||| ||||| |  ||||||||||    
T  36437307 aataactat-ccttaaaagttgtgacattttcttataaataggaccaaaactttttttgaaa 36437367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 255 - 382
Target Start/End: Complemental strand, 11435679 - 11435553
Alignment:
Q  255 cctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaaataattacacctt 354  Q
    ||||||||||||||||||  |||||||||||  |  ||||||| |||| ||||  |||||||||  | |||| ||||||| |||  |||||||| |||||    
T  11435679 cctcataaaaaattgtgatgcattaaatacatccactaatattaaaaaaacaaacattaaataaatgatataaaagtttt-taaacaataattatacctt 11435581  T
Q  355 aaaagttgtgatattttcttataaatag 382  Q
    | ||||||||| ||||||||||||||||    
T  11435580 ataagttgtgacattttcttataaatag 11435553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 251 - 382
Target Start/End: Complemental strand, 28470064 - 28469934
Alignment:
Q  251 ataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaaataattaca 350  Q
    |||| ||||||||||||||||||||||||||||||| |   ||||||||||||| ||  ||||||||| || || | |||   | |||| ||||| ||||    
T  28470064 atactctcataaaaaattgtgaaacattaaatacacccacaaatatttaaaagagaaacattaaataa-ggatagaaaagacatttaagtaataactaca 28469966  T
Q  351 ccttaaaagttgtgatattttcttataaatag 382  Q
    |||||||| |||||| ||||| ||||||||||    
T  28469965 ccttaaaatttgtgacatttttttataaatag 28469934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 225 - 285
Target Start/End: Original strand, 17988145 - 17988205
Alignment:
Q  225 ataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaataca 285  Q
    |||||||||  ||||| |||||||||||| |||||||| ||||||||||||||||||||||    
T  17988145 ataacttttaaaataattttacaaatatatcctcataataaattgtgaaacattaaataca 17988205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 242 - 402
Target Start/End: Original strand, 27442380 - 27442539
Alignment:
Q  242 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaa 341  Q
    |||||||||||| ||||||||||| |||||||  |||||||| || | |||||||| |||   |||| ||||||| |||| || | |||| || |||  |    
T  27442380 tttacaaatatatcctcataaaaatttgtgaagtattaaatatacccattaatattgaaagaccaac-attaaatgagggttagaaaagtcttttaaaca 27442478  T
Q  342 ataattacaccttaaaagttgtgatattttcttataaatagaaccaatatcttttttgaaa 402  Q
     ||| || || |||||||||||||| ||||||||||||||| |||||  | ||||||||||    
T  27442479 ctaaatatactttaaaagttgtgattttttcttataaataggaccaagtttttttttgaaa 27442539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 405
Target Start/End: Complemental strand, 42745683 - 42745521
Alignment:
Q  242 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaa 341  Q
    |||||||||||||||| ||| ||  |||||||||||||||||||  |  ||||||| ||||| |||   |||||| |||| || | |||| || |||  |    
T  42745683 tttacaaatatacccttatagaatgttgtgaaacattaaatacatccactaatattaaaaaggcaatccttaaatgagggataaa-aagtattttaaaca 42745585  T
Q  342 ataattacaccttaaaagttgtgatattttcttataaatagaaccaatatcttttttgaaattt 405  Q
    ||||||| || | |||| |||||| |||||||||||||||| |||||  | |||||||||||||    
T  42745584 ataattatacttcaaaaattgtgacattttcttataaataggaccaaatttttttttgaaattt 42745521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 378
Target Start/End: Original strand, 17988359 - 17988427
Alignment:
Q  310 attaaataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataa 378  Q
    ||||||||||||||| | |||| || |||  ||||| ||||||||||||||||||| ||||||||||||    
T  17988359 attaaataaggggtaaaaaagtcttttaaacaataactacaccttaaaagttgtgacattttcttataa 17988427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 302
Target Start/End: Original strand, 31003576 - 31003652
Alignment:
Q  226 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaa 302  Q
    ||||||||||||||  |||||||||||||| | ||| |||||||| |||||||||||||| ||  ||||||| ||||    
T  31003576 taactttttgaatatttttacaaatatacctttatagaaaattgttaaacattaaatacattcgctaatattaaaaa 31003652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 272 - 321
Target Start/End: Original strand, 26976609 - 26976658
Alignment:
Q  272 aaacattaaatacactctttaatatttaaaagacaactattaaataaggg 321  Q
    ||||||||| |||||||||||||||| ||||||||| |||||||| ||||    
T  26976609 aaacattaagtacactctttaatattaaaaagacaaatattaaatgaggg 26976658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 324
Target Start/End: Original strand, 2619677 - 2619777
Alignment:
Q  225 ataactttttgaataagtttacaaatataccctcat-aaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggt 323  Q
    |||||||||||||||  | | ||| ||||||||||| |||||||||| || |||||||| || ||| |||| ||||||| ||||  ||||||| ||||||    
T  2619677 ataactttttgaatatttgtgcaattataccctcataaaaaaattgtcaagcattaaatgcattctctaatgtttaaaaaacaaacattaaatgaggggt 2619776  T
Q  324 a 324  Q
    |    
T  2619777 a 2619777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 25130265 - 25130217
Alignment:
Q  230 tttttgaataagtttacaaatataccctcataaaaaattgtgaaacatt 278  Q
    ||||||||||  |||||||||||||| ||||| ||||||||||||||||    
T  25130265 tttttgaatacttttacaaatataccatcatagaaaattgtgaaacatt 25130217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 382
Target Start/End: Original strand, 31003693 - 31003728
Alignment:
Q  347 tacaccttaaaagttgtgatattttcttataaatag 382  Q
    ||||||||||||||||||| ||||||||||||||||    
T  31003693 tacaccttaaaagttgtgacattttcttataaatag 31003728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 273
Target Start/End: Original strand, 45691597 - 45691640
Alignment:
Q  230 tttttgaataagtttacaaatataccctcataaaaaattgtgaa 273  Q
    ||||||||||  |||||||||||||||||||||||| |||||||    
T  45691597 tttttgaatatttttacaaatataccctcataaaaatttgtgaa 45691640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 226 - 388
Target Start/End: Complemental strand, 51429 - 51267
Alignment:
Q  226 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtat 325  Q
    |||| |||||||||  ||||||| |||||||||||||||| ||||||||||||||||||||    ||| ||| |||||| || |||||||| |||| ||     
T  51429 taacattttgaatatttttacaattataccctcataaaaagttgtgaaacattaaatacaccaactaaaattaaaaagagaattattaaatgagggataa 51330  T
Q  326 acaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaa 388  Q
    | || | || |||| ||||| ||||||||||||||||||| |||| |||||||||||||||||    
T  51329 aaaaatcttttaagcaataaatacaccttaaaagttgtgacatttacttataaatagaaccaa 51267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 215 - 378
Target Start/End: Complemental strand, 18705166 - 18705003
Alignment:
Q  215 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaa 314  Q
    |||||||||  ||||||||||||||  |||||||||||| ||| ||||||| ||||||| ||||||||||||   |||||||| |||| | ||  |||||    
T  18705166 attaattagtgtaactttttgaatatttttacaaatatatccttataaaaagttgtgaagcattaaatacacctattaatattaaaaacaaaaacattaa 18705067  T
Q  315 ataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataa 378  Q
    |||| ||||| | |||| || |||| ||||| ||||||||||||||| |||| |||||||||||    
T  18705066 ataaagggtaaaaaagtcttttaagtaataactacaccttaaaagttatgatgttttcttataa 18705003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 215 - 402
Target Start/End: Complemental strand, 6688956 - 6688767
Alignment:
Q  215 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaa--ctatt 312  Q
    |||||||||  |||||||||| |||   |||||||||||||||||||||||||||| || |||||||||||||   |||||| | ||| ||||   ||||    
T  6688956 attaattagtgtaactttttgcatactattacaaatataccctcataaaaaattgtaaagcattaaatacacttactaatatattaaaaacaaacatatt 6688857  T
Q  313 aaataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaatatcttttttgaaa 402  Q
    ||||||||| || | |||| || |||  ||||| |||||||||||||||||||||||||||||||  ||| ||||  || ||||||||||    
T  6688856 aaataagggatagaaaagtcttttaaacaataactacaccttaaaagttgtgatattttcttatatttaggaccataatattttttgaaa 6688767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 226 - 402
Target Start/End: Original strand, 11691051 - 11691225
Alignment:
Q  226 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtat 325  Q
    ||||||||||||||  |||||||||| | |||||||||| ||| ||||| |||||||||||||  ||| ||| |||||| ||  ||||||| ||||  ||    
T  11691051 taactttttgaatatttttacaaatacatcctcataaaatattatgaaatattaaatacactcactaagattaaaaagagaaacattaaatgaggg--at 11691148  T
Q  326 acaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaatagaaccaatatcttttttgaaa 402  Q
    | |||| || |||||||||| ||||||| |||| ||| || ||||  |||||||||| |||||| | ||||||||||    
T  11691149 agaagtcttttaagaaataactacacctaaaaaattgcgacatttgtttataaataggaccaatttattttttgaaa 11691225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 242 - 380
Target Start/End: Original strand, 3629217 - 3629355
Alignment:
Q  242 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaa 341  Q
    |||||||||||| ||| ||| ||  ||||||||||||||||||| ||  ||||||| |||| |||   ||||||| |||| || | |||| || |||| |    
T  3629217 tttacaaatataaccttatagaatgttgtgaaacattaaatacattcactaatattaaaaatacagtcattaaattagggatacaaaagtcttttaagta 3629316  T
Q  342 ataattacaccttaaaagttgtgatattttcttataaat 380  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  3629317 ataactacaccttaaaagttgtgacattttcttataaat 3629355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 243 - 324
Target Start/End: Complemental strand, 14417995 - 14417914
Alignment:
Q  243 ttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggta 324  Q
    |||||||| |||| ||||||||||||||||| |||||||||||| |  |||||||||||| |||| ||||||| ||||||||    
T  14417995 ttacaaatttaccttcataaaaaattgtgaagcattaaatacacccactaatatttaaaatacaaatattaaacaaggggta 14417914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 226 - 362
Target Start/End: Original strand, 11983574 - 11983709
Alignment:
Q  226 taactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtat 325  Q
    ||||||||||||||  ||||||||||||| ||  ||||| ||||||||||||||||||||  |  ||||||| |||||| ||  ||||||| |||||||     
T  11983574 taactttttgaatacttttacaaatatactcttgtaaaa-attgtgaaacattaaatacatccactaatattaaaaagagaaacattaaatgaggggtaa 11983672  T
Q  326 acaagttttctaagaaataattacaccttaaaagttg 362  Q
    | || | || |||  ||||||||||||||||||||||    
T  11983673 aaaaatcttttaaacaataattacaccttaaaagttg 11983709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 376
Target Start/End: Complemental strand, 2225747 - 2225586
Alignment:
Q  215 attaattagcataactttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaa 314  Q
    |||||||||  ||||||||  ||||  |||||||||||||| ||||||||| |||||||||||||||||||  |  ||||||| |||| | ||  |||||    
T  2225747 attaattagtgtaacttttgaaatatttttacaaatataccttcataaaaagttgtgaaacattaaatacaaccactaatattaaaaacaaaaacattaa 2225648  T
Q  315 ataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttat 376  Q
    ||||  |||| | |||| || |||  ||| ||  ||||||||| |||||||| |||||||||    
T  2225647 ataaatggtagaaaagtcttttaaacaatcatgtcaccttaaatgttgtgatgttttcttat 2225586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 230 - 381
Target Start/End: Complemental strand, 4449589 - 4449438
Alignment:
Q  230 tttttgaataagtttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactatt-aaataaggggtataca 328  Q
    ||||||||||  ||||||||||||||||||| | ||||||||  ||||||||||||  | |||| ||| |||||||||  ||| |||| | ||||| | |    
T  4449589 tttttgaatatttttacaaatataccctcatgagaaattgtg--acattaaatacaaccattaagattaaaaagacaaacattgaaatga-gggtaaaaa 4449493  T
Q  329 agttttctaagaaataatt--acaccttaaaagttgtgatattttcttataaata 381  Q
    ||| || |||||||||| |  ||||||||||| |||||| |||||||||||||||    
T  4449492 agtcttttaagaaataaatacacaccttaaaaattgtgacattttcttataaata 4449438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 242 - 378
Target Start/End: Complemental strand, 7735894 - 7735758
Alignment:
Q  242 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaa 341  Q
    |||||||||||||||| |||||||||||| ||||||||||||||| |  ||||||| |||| | ||  |||||||||  | || | ||||||| |||| |    
T  7735894 tttacaaatatacccttataaaaaattgtcaaacattaaatacacccgctaatattaaaaacaaaaacattaaataattgatagaaaagttttttaagta 7735795  T
Q  342 ataattacaccttaaaagttgtgatattttcttataa 378  Q
    |||| | ||  | |||||| | |||||||||||||||    
T  7735794 ataactgcaattcaaaagtagcgatattttcttataa 7735758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 379
Target Start/End: Original strand, 3257266 - 3257354
Alignment:
Q  291 taatatttaaaagacaactattaaataaggggtatacaagttttctaagaaataattacaccttaaaagttgtgatattttcttataaa 379  Q
    ||||||| |||||||||  |||||||||| | || | |||| || |||  |||| |||| |||||||||||||||||||||||||||||    
T  3257266 taatattaaaaagacaaacattaaataagagatagaaaagtcttttaaacaatagttacgccttaaaagttgtgatattttcttataaa 3257354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 302
Target Start/End: Original strand, 29948075 - 29948135
Alignment:
Q  242 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaa 302  Q
    ||||||||||||| || |||||||||| | ||||||||||||||||| |||||||| ||||    
T  29948075 tttacaaatatactctaataaaaaattataaaacattaaatacactcattaatattaaaaa 29948135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 14917863 - 14917819
Alignment:
Q  242 tttacaaatataccctcataaaaaattgtgaaacattaaatacac 286  Q
    ||||||||||||||||| ||||||||||||||  |||||||||||    
T  14917863 tttacaaatataccctcgtaaaaaattgtgaagaattaaatacac 14917819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 120
Target Start/End: Complemental strand, 6447511 - 6447478
Alignment:
Q  87 gacaccccacttattcactttaaagatgaatttc 120  Q
    |||||||||||||||||||||||| |||||||||    
T  6447511 gacaccccacttattcactttaaaaatgaatttc 6447478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0836 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 242 - 398
Target Start/End: Complemental strand, 3162 - 3006
Alignment:
Q  242 tttacaaatataccctcataaaaaattgtgaaacattaaatacactctttaatatttaaaagacaactattaaataaggggtatacaagttttctaagaa 341  Q
    |||||||| || |||| ||| ||  |||||||||||||||||||  |  ||||||| |||||| || |||| ||| |||| || | |||| || |||  |    
T  3162 tttacaaacatgcccttatagaatgttgtgaaacattaaatacatccactaatattaaaaagagaattattgaatgagggatagaaaagtcttttaaaca 3063  T
Q  342 ataattacaccttaaaagttgtgatattttcttataaatagaaccaatatctttttt 398  Q
    |||| ||||||||||||||||||| |||||||||||||||| ||||| | |||||||    
T  3062 ataactacaccttaaaagttgtgacattttcttataaataggaccaaaaactttttt 3006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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