View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0482_low_15 (Length: 322)
Name: NF0482_low_15
Description: NF0482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0482_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 14718786 - 14718889
Alignment:
| Q |
101 |
tggttttcttagttttttaaaacaagtatcatatggtttgacatttttgttttaaaaccaataaaataagaaacgattttacaaaaacaagttgatcaaa |
200 |
Q |
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| T |
14718786 |
tggttgtcttagttttttaaaacaagtatcatatggtttgtcttttttgttttaaaaccaataaaataagaaacgattttacaaaaacaagttgatcaaa |
14718885 |
T |
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| Q |
201 |
cacg |
204 |
Q |
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|||| |
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| T |
14718886 |
cacg |
14718889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 14718911 - 14718956
Alignment:
| Q |
227 |
aaaaactgaaaaacggatttgatgaagtgaatcgatcggctctctg |
272 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
14718911 |
aaaaactgaaaaacagatttgatgaagtgaatcgatcggccctctg |
14718956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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