View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0482_low_19 (Length: 317)

Name: NF0482_low_19
Description: NF0482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0482_low_19
NF0482_low_19
[»] chr6 (19 HSPs)
chr6 (105-303)||(27604341-27604539)
chr6 (88-297)||(26802801-26803004)
chr6 (105-297)||(27592658-27592848)
chr6 (105-297)||(27679305-27679495)
chr6 (105-297)||(27677257-27677442)
chr6 (105-297)||(27706041-27706230)
chr6 (88-212)||(28786677-28786796)
chr6 (88-212)||(28792798-28792917)
chr6 (88-212)||(27427236-27427356)
chr6 (88-203)||(28781549-28781659)
chr6 (106-185)||(27698224-27698301)
chr6 (137-197)||(26646932-26646992)
chr6 (137-197)||(26752900-26752960)
chr6 (112-196)||(26143322-26143404)
chr6 (112-196)||(25538997-25539079)
chr6 (252-297)||(27530983-27531028)
chr6 (137-197)||(25483512-25483572)
chr6 (139-197)||(26056375-26056433)
chr6 (139-197)||(26076345-26076403)
[»] scaffold0003 (1 HSPs)
scaffold0003 (88-212)||(60007-60127)
[»] chr4 (6 HSPs)
chr4 (88-212)||(18074199-18074319)
chr4 (105-208)||(18655110-18655211)
chr4 (105-208)||(18723718-18723819)
chr4 (105-202)||(18731137-18731232)
chr4 (105-201)||(18699033-18699127)
chr4 (105-208)||(18679193-18679301)
[»] scaffold0419 (1 HSPs)
scaffold0419 (88-203)||(7935-8045)
[»] scaffold0277 (2 HSPs)
scaffold0277 (105-203)||(13312-13409)
scaffold0277 (105-212)||(4349-4457)
[»] chr1 (3 HSPs)
chr1 (114-212)||(267994-268094)
chr1 (154-203)||(28164048-28164097)
chr1 (139-203)||(28127333-28127397)


Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 105 - 303
Target Start/End: Original strand, 27604341 - 27604539
Alignment:
Q  105 taacaacatcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaacgtaaatg 204  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  27604341 taacaacatcataatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaacgtaaata 27604440  T
Q  205 aaaaaggtatttgatctcatttaaccttgaatatgagattatagggtaattgaaattgaataaagaaaatacaaaagggaaaaataggatttatgtagt 303  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27604441 aaaaaggtatttgatctcatttaaccttgaatatgagattattgggtaattgaaattgaataaagaaaatacaaaagggaaaaataggatttatgtagt 27604539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 88 - 297
Target Start/End: Complemental strand, 26803004 - 26802801
Alignment:
Q  88 ataagttagtatgtaattaacaacatcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaatactt 187  Q
    ||||||||||||||| | |||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||  |||||||||||||||||||||    
T  26803004 ataagttagtatgtact-aacaacatcacaatcacatccatgtac--tcataatatattatacatttctaactatttcaacatataaataactaatactt 26802908  T
Q  188 gtttaaaaacgtaaatgaaaaaggtatttgatctcatttaaccttgaatatgagattatagggtaattgaaattgaataaagaaaatacaaaagggaaaa 287  Q
    ||||||||||||| || | |||||||||   || ||||||||||| || |||||||||| ||| ||||||| ||||| ||| |||||| |||||||||||    
T  26802907 gtttaaaaacgtatataagaaaggtatt---tcccatttaacctttaagatgagattattgggaaattgaagttgaagaaataaaatataaaagggaaaa 26802811  T
Q  288 ataggattta 297  Q
    ||||||||||    
T  26802810 ataggattta 26802801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 105 - 297
Target Start/End: Original strand, 27592658 - 27592848
Alignment:
Q  105 taacaacatcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaa---tacttgtttaaaaacgtaa 201  Q
    ||||||||||||||||||||||||||||  | ||||| |||||||||||||||||||||| |||||||||||||||||   |||||||||||||  |||     
T  27592658 taacaacatcacaatcacatccatgtac--taagaatgtattatacatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtat 27592755  T
Q  202 atgaaaaaggtatttgatctcatttaaccttgaatatgagattatagggtaattgaaattgaataaagaaaatacaaaagggaaaaataggattta 297  Q
    || |||||||||||   || | ||||||||| || |||||||||| |   ||||||| ||||| ||| |||||| |||||||||||||||||||||    
T  27592756 ataaaaaaggtatt---tcccttttaacctttaagatgagattattgtaaaattgaagttgaagaaataaaatagaaaagggaaaaataggattta 27592848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 105 - 297
Target Start/End: Complemental strand, 27679495 - 27679305
Alignment:
Q  105 taacaacatcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaa---tacttgtttaaaaacgtaa 201  Q
    ||||||||||||||||||||||||||||  | ||||| |||||||||||||||||||||| |||||||||||||||||   |||||||||||||  |||     
T  27679495 taacaacatcacaatcacatccatgtac--taagaatgtattatacatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtat 27679398  T
Q  202 atgaaaaaggtatttgatctcatttaaccttgaatatgagattatagggtaattgaaattgaataaagaaaatacaaaagggaaaaataggattta 297  Q
    || |||||||||||   || | ||||||||| || |||||||||| |   ||||||| ||||| ||| |||||| |||||||||||||||||||||    
T  27679397 ataaaaaaggtatt---tcccttttaacctttaagatgagattattgtaaaattgaagttgaagaaataaaatagaaaagggaaaaataggattta 27679305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 105 - 297
Target Start/End: Original strand, 27677257 - 27677442
Alignment:
Q  105 taacaacatcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaac-gtaaat 203  Q
    ||||||||||||||||||||||||||||      ||| |||||||||||||||||||||| ||||||||||||||||||| |  ||| ||||| ||| ||    
T  27677257 taacaacatcacaatcacatccatgtact-----aatgtattatacatttctaactatttcgacatataaataactaatagtacttttaaaactgtatat 27677351  T
Q  204 gaaaaaggtatttgatctcatttaaccttgaatatgagattatagggtaattgaaattgaataaagaaaatacaaaagggaaaaataggattta 297  Q
     |||||||||||   || | ||||||||| || |||||||||| | | ||||||| ||||| ||| |||||| |||||||||||||||||||||    
T  27677352 aaaaaaggtatt---tcccttttaacctttaagatgagattattgtgaaattgaagttgaagaaataaaatagaaaagggaaaaataggattta 27677442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 105 - 297
Target Start/End: Original strand, 27706041 - 27706230
Alignment:
Q  105 taacaacatcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaa---tacttgtttaaaaacgtaa 201  Q
    |||||||||| |||||||||||||||||  | ||||| |||||| ||||||||||||||| |||||||||||||||||   |||||||||||||  |||     
T  27706041 taacaacatcccaatcacatccatgtac--taagaatgtattattcatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtat 27706138  T
Q  202 atgaaaaaggtatttgatctcatttaaccttgaatatgagattatagggtaattgaaattgaataaagaaaatacaaaagggaaaaataggattta 297  Q
    || ||||||||||||     | ||||| ||| || |||||||||| | | ||||||| ||||| ||| |||||| |||||||||||||||||||||    
T  27706139 ataaaaaaggtattt----ccctttaaactttaagatgagattattgtgaaattgaagttgaagaaataaaatagaaaagggaaaaataggattta 27706230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 88 - 212
Target Start/End: Complemental strand, 28786796 - 28786677
Alignment:
Q  88 ataagttagtatgtaattaacaacatcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataact-aatact 186  Q
    |||||||||||||    ||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||| |||||| | ||||||    
T  28786796 ataagttagtatg----taacaacatcacaatcacatccatgt--actcagaatatagtatacatttctaactattttgacataaaaataattaaatact 28786703  T
Q  187 tgtttaaaaacgtaaatgaaaaaggt 212  Q
    |||||||||||||||||  |||||||    
T  28786702 tgtttaaaaacgtaaatagaaaaggt 28786677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 88 - 212
Target Start/End: Complemental strand, 28792917 - 28792798
Alignment:
Q  88 ataagttagtatgtaattaacaacatcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataact-aatact 186  Q
    |||||||||||||    ||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||| |||||| | ||||||    
T  28792917 ataagttagtatg----taacaacatcacaatcacatccatgt--actcagaatatagtatacatttctaactattttgacataaaaataattaaatact 28792824  T
Q  187 tgtttaaaaacgtaaatgaaaaaggt 212  Q
    |||||||||||||||||  |||||||    
T  28792823 tgtttaaaaacgtaaatagaaaaggt 28792798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 88 - 212
Target Start/End: Original strand, 27427236 - 27427356
Alignment:
Q  88 ataagttagtatgtaattaacaacatcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaatactt 187  Q
    ||||||||||||||||  |||| || |||||||||||||||||||  ||| |||||||||||||||| ||||||||||||||||||||||||||| | ||    
T  27427236 ataagttagtatgtaac-aacatca-cacaatcacatccatgtac--tcataatatattatacatttttaactattttgacatataaataactaacaatt 27427331  T
Q  188 gtttaaaaacgtaaatgaaaaaggt 212  Q
    |||||||||| ||||| ||||||||    
T  27427332 gtttaaaaacataaataaaaaaggt 27427356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 88 - 203
Target Start/End: Complemental strand, 28781659 - 28781549
Alignment:
Q  88 ataagttagtatgtaattaacaacatcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataact-aatact 186  Q
    |||||||||||||    ||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||| |||||| | |||| |    
T  28781659 ataagttagtatg----taacaacatcacaatcacatccatgt--actcagaatatagtatacatttctaactattttgacataaaaataattaaataat 28781566  T
Q  187 tgtttaaaaacgtaaat 203  Q
    |||||||||||||||||    
T  28781565 tgtttaaaaacgtaaat 28781549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 106 - 185
Target Start/End: Original strand, 27698224 - 27698301
Alignment:
Q  106 aacaacatcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaatac 185  Q
    |||||||||||||||||||| ||||||  ||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  27698224 aacaacatcacaatcacatctatgtac--tcagaatatattataaatttctaactatttcgacatataaataactaatac 27698301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 26646992 - 26646932
Alignment:
Q  137 agaatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaac 197  Q
    ||||||||||||||| |||||||| ||||||||||||||||| | ||||||||||||||||    
T  26646992 agaatatattatacagttctaactcttttgacatataaataatttatacttgtttaaaaac 26646932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 26752960 - 26752900
Alignment:
Q  137 agaatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaac 197  Q
    ||||||||||||||| |||||||| ||||||||||||||||| | ||||||||||||||||    
T  26752960 agaatatattatacagttctaactcttttgacatataaataatttatacttgtttaaaaac 26752900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 26143404 - 26143322
Alignment:
Q  112 atcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaa 196  Q
    |||| |||||||||||||||   | |||||||||||| || |||||||| ||||||||||||||||||| | |||||||| ||||    
T  26143404 atcaaaatcacatccatgtat--tgagaatatattatgcaattctaacttttttgacatataaataacttacacttgttttaaaa 26143322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 25539079 - 25538997
Alignment:
Q  112 atcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaa 196  Q
    |||| |||||||||||||||   | |||||||||||| || |||||| | ||||||||||||||||||| | |||||||| ||||    
T  25539079 atcaaaatcacatccatgtat--tgagaatatattatgcaattctaatttttttgacatataaataacttacacttgttttaaaa 25538997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 252 - 297
Target Start/End: Original strand, 27530983 - 27531028
Alignment:
Q  252 aattgaaattgaataaagaaaatacaaaagggaaaaataggattta 297  Q
    |||||||||| || |||||||||| |||||||||||||||||||||    
T  27530983 aattgaaattaaagaaagaaaatataaaagggaaaaataggattta 27531028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 25483572 - 25483512
Alignment:
Q  137 agaatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaac 197  Q
    ||||||||| || || |||||||| ||||||||||||||||||| | |||||||| |||||    
T  25483572 agaatatatcatgcaattctaacttttttgacatataaataacttacacttgttttaaaac 25483512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 26056433 - 26056375
Alignment:
Q  139 aatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaac 197  Q
    |||||||||| || |||||||| ||||||||||||||||||| | ||| |||| |||||    
T  26056433 aatatattatgcaattctaacttttttgacatataaataacttacactagttttaaaac 26056375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 26076403 - 26076345
Alignment:
Q  139 aatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaac 197  Q
    |||||||||| || |||||||| ||||||||||||||||||| | ||| |||| |||||    
T  26076403 aatatattatgcaattctaacttttttgacatataaataacttacactagttttaaaac 26076345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 88 - 212
Target Start/End: Complemental strand, 60127 - 60007
Alignment:
Q  88 ataagttagtatgtaattaacaacatcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaatactt 187  Q
    ||||||||||||||||  |||| || |||||||||||||||||||  ||| |||||||||||||||| ||||||||||||||||||||||||||| | ||    
T  60127 ataagttagtatgtaac-aacatca-cacaatcacatccatgtac--tcataatatattatacatttttaactattttgacatataaataactaacaatt 60032  T
Q  188 gtttaaaaacgtaaatgaaaaaggt 212  Q
    |||||||||| ||||| ||||||||    
T  60031 gtttaaaaacataaataaaaaaggt 60007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 88 - 212
Target Start/End: Complemental strand, 18074319 - 18074199
Alignment:
Q  88 ataagttagtatgtaattaacaacatcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaatactt 187  Q
    ||||||||||||||||  |||| || |||||||||||||||||||  ||| |||||||||||||||| ||||||||||||||||||||||||||| | ||    
T  18074319 ataagttagtatgtaac-aacatca-cacaatcacatccatgtac--tcataatatattatacatttttaactattttgacatataaataactaacaatt 18074224  T
Q  188 gtttaaaaacgtaaatgaaaaaggt 212  Q
    |||||||||| ||||| ||||||||    
T  18074223 gtttaaaaacataaataaaaaaggt 18074199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 105 - 208
Target Start/End: Original strand, 18655110 - 18655211
Alignment:
Q  105 taacaacatcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaacgtaaatg 204  Q
    ||||||||||||| |||||||||| |||  ||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||     
T  18655110 taacaacatcacagtcacatccatttac--tcataatatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaatgtaaata 18655207  T
Q  205 aaaa 208  Q
    ||||    
T  18655208 aaaa 18655211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 105 - 208
Target Start/End: Original strand, 18723718 - 18723819
Alignment:
Q  105 taacaacatcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaacgtaaatg 204  Q
    ||||||||||||| |||||||||| |||  ||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||     
T  18723718 taacaacatcacagtcacatccatttac--tcataatatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaatgtaaata 18723815  T
Q  205 aaaa 208  Q
    ||||    
T  18723816 aaaa 18723819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 105 - 202
Target Start/End: Original strand, 18731137 - 18731232
Alignment:
Q  105 taacaacatcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaacgtaaa 202  Q
    ||||||||||||| |||||||||||| |  ||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  18731137 taacaacatcacagtcacatccatgtcc--tcataatatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaatgtaaa 18731232  T

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Target: chr4; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 105 - 201
Target Start/End: Original strand, 18699033 - 18699127
Alignment:
Q  105 taacaacatcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaacgtaa 201  Q
    ||||||||||||| |||||||||||| |  ||| | ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18699033 taacaacatcacagtcacatccatgtcc--tcatagtatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaacgtaa 18699127  T

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Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 105 - 208
Target Start/End: Original strand, 18679193 - 18679301
Alignment:
Q  105 taacaacatcacaatcacatccatgtacactcagaatatattatacatttctaa-------ctattttgacatataaataactaatacttgtttaaaaac 197  Q
    ||||||||||||| ||||| ||||||||  ||| ||||||| ||||||||||||       |||||||||| ||||||||||||||||||||||||||||    
T  18679193 taacaacatcacagtcacacccatgtac--tcataatatatcatacatttctaaattcaaactattttgacttataaataactaatacttgtttaaaaac 18679290  T
Q  198 gtaaatgaaaa 208  Q
    |||||| ||||    
T  18679291 gtaaataaaaa 18679301  T

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Target: scaffold0419 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 88 - 203
Target Start/End: Complemental strand, 8045 - 7935
Alignment:
Q  88 ataagttagtatgtaattaacaacatcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataact-aatact 186  Q
    |||||||||||||    ||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||| || ||| | ||||||    
T  8045 ataagttagtatg----taacaacatcacaatcacatccatgt--actcagaatatagtatacatttctaactattttgacataaaagtaattaaatact 7952  T
Q  187 tgtttaaaaacgtaaat 203  Q
    |||||||||||||||||    
T  7951 tgtttaaaaacgtaaat 7935  T

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Target: scaffold0277 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 13312 - 13409
Alignment:
Q  105 taacaacatcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataact-aatacttgtttaaaaacgtaaat 203  Q
    ||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||| || ||| | |||||||||||||||||||||||    
T  13312 taacaacatcacaatcacatccatgtac--tcagaatatagtatacatttctaactattttgacataaaagtaattaaatacttgtttaaaaacgtaaat 13409  T

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Target: scaffold0277; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 212
Target Start/End: Original strand, 4349 - 4457
Alignment:
Q  105 taacaacatcacaatcacatccatgtacactcagaatatat--tatacatttctaactattttgacatataaataact-aatacttgtttaaaaacgtaa 201  Q
    ||||||||||||||||||||||||||  ||||| |||||||  |||||||||||||||||| ||||||| || ||| | |||||||||||||||||||||    
T  4349 taacaacatcacaatcacatccatgt--actcataatatatggtatacatttctaactattgtgacataaaagtaattaaatacttgtttaaaaacgtaa 4446  T
Q  202 atgaaaaaggt 212  Q
    ||  |||||||    
T  4447 atataaaaggt 4457  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 267994 - 268094
Alignment:
Q  114 cacaatcacatccatgtac--actcagaatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaacgtaaatgaaaaagg 211  Q
    |||||||||||||||| |   ||||| |||||||||||| ||||||||||||| | |||||||| ||||||||||| |||| |||||||||| |||||||    
T  267994 cacaatcacatccatgcatgtactcaaaatatattatacgtttctaactatttcgtcatataaacaactaatacttatttagaaacgtaaataaaaaagg 268093  T
Q  212 t 212  Q
    |    
T  268094 t 268094  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 28164048 - 28164097
Alignment:
Q  154 tctaactattttgacatataaataactaatacttgtttaaaaacgtaaat 203  Q
    |||||||||||||||||||||||| || |||||||||||||||| |||||    
T  28164048 tctaactattttgacatataaatatcttatacttgtttaaaaacataaat 28164097  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 28127333 - 28127397
Alignment:
Q  139 aatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaacgtaaat 203  Q
    |||| ||||||||  ||| |||||||||||||||||||| || |||||||||||||||| |||||    
T  28127333 aatacattatacaactctgactattttgacatataaataccttatacttgtttaaaaacataaat 28127397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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