View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0482_low_2 (Length: 558)
Name: NF0482_low_2
Description: NF0482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0482_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 30 - 553
Target Start/End: Complemental strand, 37491753 - 37491239
Alignment:
| Q |
30 |
gtggaaagctttctagtctggcttgttgctccgctttcctttcgcataca---ttgtctgattctggaggctgacacatcgaaaatcagtttcattttat |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37491753 |
gtggaaagctttctagtctggcttgttgctccgctttcctttcgcatacaatattgtctgattctggaggctgacacatggaaaatcagtttcattttat |
37491654 |
T |
|
| Q |
127 |
atatctcctttcttttttggggtacagagaccttttttagaatttgagctgtaactta--gctaaatcatttcaattggtttgtaaggaacaaaatgtct |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37491653 |
atatctcctttcttttttggggtacagagaccttttttagaatttgagctgtaacttatagctaaatcatttcaattggtttgtaaggaacaaaatgtct |
37491554 |
T |
|
| Q |
225 |
catacttacattacatatcgacgtcttgaacatatggattatgttattagagtgtatccaagatctattaggtcgcctgtcaatgctaatccaga-cgaa |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
37491553 |
catacttacattacatatcgacgtcttgaacatatggattatgttatcagagtgtatccaagatctattaggtcgcctgtcaatgctaatccaaaccgaa |
37491454 |
T |
|
| Q |
324 |
agccgggatatgcgtacgacattggacctcagtatgtttaaatcacgaatgtttaagattagagcaaaaactcatgtgatacttaaatagtaacttttaa |
423 |
Q |
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|||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37491453 |
agccgggagatgcgtacgatattggacctcagt---------------atgtttaagattagagcaaaaactcatgtgatacttaaatagtaacttttaa |
37491369 |
T |
|
| Q |
424 |
tcatgactacggtattcagtattcacttgtatgggatctaatggtttggccataatgtgtcgtagaattggtttgtggtgttgaagaatcgaggggatca |
523 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37491368 |
tcatgactacaatattcagtattcacttgtatgggatctaatggtttggccataatgtgtcgtagaattggtttgtggtgttgaagaatcgaggggatca |
37491269 |
T |
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| Q |
524 |
atgagtttagcttggtatgtctctgctcct |
553 |
Q |
| |
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|||||||||||||||||||| |||| |||| |
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| T |
37491268 |
atgagtttagcttggtatgtttctgatcct |
37491239 |
T |
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