View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0482_low_25 (Length: 278)
Name: NF0482_low_25
Description: NF0482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0482_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 32216624 - 32216842
Alignment:
| Q |
1 |
tgcctttcttagtttcatcattttctaaaataggtttattatcactgtttttcccttcatcatgtgcttcaacttccaccatagtgtagccaatggtaag |
100 |
Q |
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| T |
32216624 |
tgcctttcttagtttcatcattttctaaaacaggtttattatcactgtttttcccttcatcctgtgcttcaacttccaccatagtgtagccaatggtaag |
32216723 |
T |
|
| Q |
101 |
atatactttaattggcttctcttgaaagactgggaaaacttacttggcttatacttttacaacaatgactgaaattatcagcaatatctacctacacagg |
200 |
Q |
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| T |
32216724 |
atatactttaattggcttctcttgaaagactaggaaaacttacttcgcttatacttttacagcaatgactgaaattaccagcaatatctacctacacagt |
32216823 |
T |
|
| Q |
201 |
gcattggtgatgatgtcca |
219 |
Q |
| |
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|||||||||| |||||||| |
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| T |
32216824 |
gcattggtgaagatgtcca |
32216842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 32216214 - 32215998
Alignment:
| Q |
1 |
tgcctttcttagtttcatcattttctaaaataggtttattatcactgtttttcccttcatcatgtgcttcaacttccaccatagtgtagccaatggtaag |
100 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||| ||| |||||||||||| |||||||||||||||||| || |
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| T |
32216214 |
tgcctttcttagtttcatcattttctaaaacatgtttattatcaatgtttttcccttcatcctgt-cttcaacttccatcatagtgtagccaatggtgag |
32216116 |
T |
|
| Q |
101 |
atatactttaattggcttctcttgaaagactgggaaaacttacttggcttatacttttacaacaatgactgaaattatcagcaatat---ctacctacac |
197 |
Q |
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| T |
32216115 |
a-atactttaattggcttctcttgacagactaggaaaatttacttggcttatacttttacagcaatgactgaaattaccagcaatatctactacctacac |
32216017 |
T |
|
| Q |
198 |
agggcattggtgatgatgt |
216 |
Q |
| |
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| ||||||||||| ||||| |
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| T |
32216016 |
aaggcattggtgaagatgt |
32215998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 51 - 216
Target Start/End: Original strand, 16837572 - 16837736
Alignment:
| Q |
51 |
ttcccttcatcatgtgcttcaacttccaccatagtgtagccaatggtaagatatactttaattggcttctcttgaaa-gactgggaaaacttacttgg-c |
148 |
Q |
| |
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|||||||| ||||||||||||||||||| |||| ||||||||||| ||||| |||||||||| |||||||||| ||| || | |||||| ||||||| | |
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| T |
16837572 |
ttcccttcgtcatgtgcttcaacttccatcatattgtagccaatg-taaga-atactttaat-ggcttctctttaaaagattaggaaaatttacttgtac |
16837668 |
T |
|
| Q |
149 |
ttatacttttacaacaatgactgaaattatcagcaatatctacctacacagggcattggtgatgatgt |
216 |
Q |
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||||||||||||| |||||||||||||| ||||||| |||||||||||| ||||||||| ||||| |
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| T |
16837669 |
ttatacttttacagcaatgactgaaattggcagcaatgtctacctacacaaaacattggtgaagatgt |
16837736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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