View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0482_low_3 (Length: 504)
Name: NF0482_low_3
Description: NF0482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0482_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 47 - 466
Target Start/End: Complemental strand, 4191959 - 4191534
Alignment:
| Q |
47 |
gtgttattttgaaataataaccagtggataataaataagttaatgataacggatgaacataaaaagagggatattgaataagttaactgatagcaagaga |
146 |
Q |
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| T |
4191959 |
gtgttattttgaaataataaccagtggataataaataagttaatgataacggatgaacataaaaagagggatattgaataagttaactgatagcaagaga |
4191860 |
T |
|
| Q |
147 |
gatcgtagtagatgtcatttctaagattttgatgacatcttgataacaatttttaattcgggtattcagttagcattgttattctaaagaataagatggt |
246 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4191859 |
gatcgtagtagatgtcatttctacgattttgatgacatcttgataacaatgtttaattcggatattcagttagcattgttattctaaagaataagatggt |
4191760 |
T |
|
| Q |
247 |
ctttttaattgcttattgtaaatgttaatgagtgactgttttctatctctagtgataaacctctctaatgtgcttggtgacaaaactcatccgagaggag |
346 |
Q |
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| T |
4191759 |
ctttttaattgct--ttgtaaatgttaatgagtgactgttttctctctctagtgataaacctctctaatgtgcttggtgacaaaactcatccgagaggag |
4191662 |
T |
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| Q |
347 |
agaagaaccaaactgctaaatt-----------nnnnnnntgcattatattatgatatgtttttcattttccacactaatcacctctcttttattagcaa |
435 |
Q |
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|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4191661 |
agaagaaccaaactgctaaattaaaaaataaaataaaaaatgcatta---tatgatatgtttttcattttccacactaatcacctctcttttattagcaa |
4191565 |
T |
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| Q |
436 |
aatgataaaactatctttagtgtcccgtatt |
466 |
Q |
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||||| ||||||||||||||||||||||||| |
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| T |
4191564 |
aatgacaaaactatctttagtgtcccgtatt |
4191534 |
T |
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