View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0482_low_34 (Length: 248)

Name: NF0482_low_34
Description: NF0482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0482_low_34
NF0482_low_34
[»] chr7 (2 HSPs)
chr7 (22-143)||(1564777-1564899)
chr7 (197-248)||(1564957-1565008)
[»] chr4 (1 HSPs)
chr4 (22-89)||(20383953-20384020)
[»] scaffold0050 (1 HSPs)
scaffold0050 (22-128)||(12864-12966)
[»] chr1 (2 HSPs)
chr1 (22-123)||(17122799-17122900)
chr1 (22-124)||(33064827-33064929)
[»] chr8 (1 HSPs)
chr8 (22-124)||(43848109-43848212)
[»] chr3 (1 HSPs)
chr3 (22-136)||(7164965-7165079)
[»] scaffold0111 (1 HSPs)
scaffold0111 (22-124)||(41242-41343)
[»] chr2 (1 HSPs)
chr2 (22-124)||(20374124-20374226)
[»] chr6 (1 HSPs)
chr6 (22-94)||(34673082-34673154)


Alignment Details
Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 1564777 - 1564899
Alignment:
Q  22 catcaaggggaagcaatgacatatcaactatgttgacatcttgaagaaccctcatcctctgccgccaatctcaaacaaagttttattaaacaaa-aggga 120  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||  ||||    
T  1564777 catcaaggggaagcaatgacatatcaactatgttgacaccttgaagaaccctcatcctctgccgctaatctcaaataaagttttattaaacaaaggggga 1564876  T
Q  121 aaaatatacaagagggcatacta 143  Q
    ||||||||||||||||| |||||    
T  1564877 aaaatatacaagagggcgtacta 1564899  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 1564957 - 1565008
Alignment:
Q  197 gcctaaggaaacttgtaattaggcatagcataccacaacgattcgtaaagaa 248  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1564957 gcctaaggaaacttgtaattaggcatagcataccacaacgatccgtaaagaa 1565008  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 20384020 - 20383953
Alignment:
Q  22 catcaaggggaagcaatgacatatcaactatgttgacatcttgaagaaccctcatcctctgccgccaa 89  Q
    |||||||||||||||| || || ||||||| |||| ||||| ||||||||| |||||| |||||||||    
T  20384020 catcaaggggaagcaacgatatctcaactaagttggcatctcgaagaacccccatcctatgccgccaa 20383953  T

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Target: scaffold0050 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 12864 - 12966
Alignment:
Q  22 catcaaggggaagcaatgacatatcaactatgttgacatcttgaagaaccctcatcctctgccgccaatctcaaacaaagttttattaaacaaaagggaa 121  Q
    ||||||| |||||||| ||||| ||||||| |||||||||  ||||||||  |||| | ||||| ||||||||||     |||||||||| |||| ||||    
T  12864 catcaagaggaagcaacgacatttcaactaggttgacatcccgaagaacctccatcatatgccgtcaatctcaaaa----ttttattaaaaaaaaaggaa 12959  T
Q  122 aaatata 128  Q
    |||||||    
T  12960 aaatata 12966  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 17122900 - 17122799
Alignment:
Q  22 catcaaggggaagcaatgacatatcaactatgttgacatcttgaagaaccctcatcctctgccgccaatctcaaacaaagttttattaaacaaaagggaa 121  Q
    |||||||| ||||||| |||||  |||||| |||| || |  | |||||||||||||| ||||||||| |||| | ||| |||||||||| ||| |||||    
T  17122900 catcaaggagaagcaacgacatcccaactaggttggcaccccgcagaaccctcatcctatgccgccaaactcagaaaaaattttattaaaaaaaggggaa 17122801  T
Q  122 aa 123  Q
    ||    
T  17122800 aa 17122799  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 33064827 - 33064929
Alignment:
Q  22 catcaaggggaagcaatgacatatcaactatgttgacatcttgaagaaccctcatcctctgccgccaatctcaaacaaagttttattaaacaaaagggaa 121  Q
    |||||||||||||||| |||||  |||||| |||| || |  | ||||||| |||||| | |||||||||||| | ||| |||||||||| ||| ||| |    
T  33064827 catcaaggggaagcaacgacatcccaactaggttggcaccccgcagaacccccatcctataccgccaatctcagagaaaattttattaaaaaaaggggga 33064926  T
Q  122 aaa 124  Q
    |||    
T  33064927 aaa 33064929  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 43848109 - 43848212
Alignment:
Q  22 catcaaggggaagcaatgacatatcaactatgttgacatcttgaagaaccctcatcctctgccgccaatctca-aacaaagttttattaaacaaaaggga 120  Q
    ||||||||||||||||  ||||  |||||| |||| || |  | |||||||||||||| |||||||||||||| |  |||  ||||||||| ||||||||    
T  43848109 catcaaggggaagcaacaacatcccaactaggttggcaccccgcagaaccctcatcctatgccgccaatctcagataaaaaatttattaaaaaaaaggga 43848208  T
Q  121 aaaa 124  Q
    ||||    
T  43848209 aaaa 43848212  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 7165079 - 7164965
Alignment:
Q  22 catcaaggggaagcaatgacatatcaactatgttgacatcttgaagaaccctcatcctctgccgccaatctcaaacaaagttttattaaacaaaagggaa 121  Q
    |||||||| ||||| |||||||  |||||| |||  || |  |||||||| ||||||| | | |||||||||||| ||| |||||||||| |||||||||    
T  7165079 catcaaggtgaagcgatgacatcccaactaggttagcaccccgaagaaccttcatcctatactgccaatctcaaagaaaattttattaaa-aaaagggaa 7164981  T
Q  122 aa-atatacaagaggg 136  Q
    || || ||||||||||    
T  7164980 aagatgtacaagaggg 7164965  T

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Target: scaffold0111 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 41242 - 41343
Alignment:
Q  22 catcaaggggaagcaatgacatatcaactatgttgacatcttgaagaaccctcatcctctgccgccaatctcaaacaaagttttattaaacaaaagggaa 121  Q
    |||||||||||||||| || ||  |||||| |||| || |  | |||||||||||||| ||||||||| |||| | ||| ||||||| ||||||| ||||    
T  41242 catcaaggggaagcaacgaaatcccaactaggttggcaccccgcagaaccctcatcctatgccgccaaactcagataaaattttatt-aacaaaatggaa 41340  T
Q  122 aaa 124  Q
    |||    
T  41341 aaa 41343  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 20374124 - 20374226
Alignment:
Q  22 catcaaggggaagcaatgacatatcaactatgttgacatcttgaagaaccctcatcctctgccgccaatctcaaacaaagttttattaaacaaaagggaa 121  Q
    |||||||||||||||| |||||  |||||| |||| || |  | ||||||| |||||| ||| ||||| |||| | ||| |||||||||| |||| ||||    
T  20374124 catcaaggggaagcaacgacatcccaactaggttgccaccccgcagaacccccatcctatgctgccaaactcagataaaattttattaaaaaaaatggaa 20374223  T
Q  122 aaa 124  Q
    |||    
T  20374224 aaa 20374226  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 34673082 - 34673154
Alignment:
Q  22 catcaaggggaagcaatgacatatcaactatgttgacatcttgaagaaccctcatcctctgccgccaatctca 94  Q
    ||||||||| |||||| |||||  |||||| ||||||| || | ||||||| |||||| | ||||||||||||    
T  34673082 catcaagggaaagcaacgacatcccaactaggttgacacctcgcagaacccccatcctataccgccaatctca 34673154  T

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