View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0482_low_36 (Length: 238)
Name: NF0482_low_36
Description: NF0482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0482_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 1816065 - 1816236
Alignment:
| Q |
1 |
taatttaaaatagaaaagtaagtcctcccctccaaaatcaacctcgaaagcaagtttgtttttcatacacttgcaatgtagaaatgttacactttctgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
1816065 |
taatttaaaatagaaaagtaagtcctcccctccaaaatcaacctcgaaagcaagtttgtttttcatacacttacaatgtagaaatgttacactttcagca |
1816164 |
T |
|
| Q |
101 |
agtcataaccatccatatagtactttatgagcagttaggataaaagttaaatttttgtcatgatatgatgat |
172 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
1816165 |
agtcataaccatccatatagtactttatgagtagttaggataaaagttaaatgtttgtcatgatatgatgat |
1816236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 49815489 - 49815453
Alignment:
| Q |
1 |
taatttaaaatagaaaagtaagtcctcccctccaaaa |
37 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||| |
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|
| T |
49815489 |
taatttaaaaaagaaaagtaagccctcccctccaaaa |
49815453 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 1013991 - 1013955
Alignment:
| Q |
1 |
taatttaaaatagaaaagtaagtcctcccctccaaaa |
37 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1013991 |
taatttaaaagagaaaagtaagtcctcccctccaaaa |
1013955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 19262015 - 19262051
Alignment:
| Q |
1 |
taatttaaaatagaaaagtaagtcctcccctccaaaa |
37 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
19262015 |
taatttaaaattgaaaagtaagccctcccctccaaaa |
19262051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 40644119 - 40644157
Alignment:
| Q |
1 |
taatttaaaatagaaaagtaagtcctcccctccaaaatc |
39 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
40644119 |
taattcaaaagagaaaagtaagtcctcccctccaaaatc |
40644157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 34980987 - 34981019
Alignment:
| Q |
1 |
taatttaaaatagaaaagtaagtcctcccctcc |
33 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
34980987 |
taatttaaaaaagaaaagtaagtcctcccctcc |
34981019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 25454822 - 25454784
Alignment:
| Q |
2 |
aatttaaaatagaaaagtaagtcctcccctccaaaatca |
40 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
25454822 |
aatttaaaaaagaaaagtaagccctcccctccaaaatca |
25454784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 36052154 - 36052117
Alignment:
| Q |
1 |
taatttaaaatagaaaagtaagtcctcccctccaaaat |
38 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||| |
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|
| T |
36052154 |
taatttaaaatagaaaagtaagtcgtcccctcctaaat |
36052117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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