View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0482_low_37 (Length: 235)
Name: NF0482_low_37
Description: NF0482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0482_low_37 |
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Alignment Details
Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 28847412 - 28847558
Alignment:
| Q |
1 |
ctttttgccagtgatttcttcatcatcataactatcatcattgaaataagtcttacattgtgattgatgatgattacgcttcatcttgagaaagtgagat |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28847412 |
ctttttgccagcgatttcttcatcatcataactatcatcattgaaataagcattaccttgtgattgatgatgattacgcttcatcttgagaaagtgagat |
28847511 |
T |
|
| Q |
101 |
cttcggtgaccacccaatgtttttccattgttgaaagtcttaccaca |
147 |
Q |
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|||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
28847512 |
cttcggtgaccacctaatgtttttccattgctgaaagtcttaccaca |
28847558 |
T |
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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 3762512 - 3762584
Alignment:
| Q |
161 |
cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtact |
233 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3762512 |
cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtact |
3762584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 3776593 - 3776665
Alignment:
| Q |
161 |
cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtact |
233 |
Q |
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|||| ||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||| ||||| |
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| T |
3776593 |
cactaccaccaacaacaggcatttccctaaccttattacgagcatgattcctccccaagatagtaatggtact |
3776665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 3745721 - 3745788
Alignment:
| Q |
166 |
ccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtact |
233 |
Q |
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|||||||||| |||||| |||||||||||||||||||| | ||| ||||||||||||||||||||||| |
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| T |
3745721 |
ccaccaacaataggcatttccctaaccttattaagagcagaatttctccccaagatagtaatagtact |
3745788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 3780906 - 3780978
Alignment:
| Q |
161 |
cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtact |
233 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||| || ||||||||||| | |||||||| |||||| |
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| T |
3780906 |
cactaccaccaacaacaggcatctccctaaccaaattaatggcaggattcctccctacgatagtaagagtact |
3780978 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 3751533 - 3751605
Alignment:
| Q |
161 |
cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtact |
233 |
Q |
| |
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|||| ||||||| || ||||||||| ||| ||||||||| | | | ||||||||||||||||||||| ||||| |
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| T |
3751533 |
cactaccaccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtact |
3751605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 43796404 - 43796322
Alignment:
| Q |
66 |
gatgatgattacgcttcatcttgagaaagtgagatcttcggtgaccacccaatgtttttccattgttgaaagtcttaccacag |
148 |
Q |
| |
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|||||||||| | ||| |||| |||||||||||||| ||||| |||||||||| |||||| ||| | ||||| || |||||| |
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| T |
43796404 |
gatgatgatttagtttcttcttaagaaagtgagatctccggtggccacccaatgcttttccgttgctaaaagtttttccacag |
43796322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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