View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0482_low_38 (Length: 233)

Name: NF0482_low_38
Description: NF0482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0482_low_38
NF0482_low_38
[»] chr3 (4 HSPs)
chr3 (90-233)||(10791892-10792046)
chr3 (96-224)||(14683746-14683886)
chr3 (93-154)||(7342060-7342121)
chr3 (178-224)||(7342157-7342203)
[»] chr1 (3 HSPs)
chr1 (90-227)||(41369247-41369395)
chr1 (92-176)||(22085857-22085941)
chr1 (186-224)||(22085798-22085836)
[»] chr8 (2 HSPs)
chr8 (90-227)||(1734704-1734852)
chr8 (95-151)||(22333995-22334051)
[»] chr7 (1 HSPs)
chr7 (92-224)||(14324305-14324449)
[»] scaffold0101 (4 HSPs)
scaffold0101 (92-176)||(46862-46946)
scaffold0101 (92-176)||(51500-51584)
scaffold0101 (186-224)||(46967-47005)
scaffold0101 (186-224)||(51605-51643)
[»] chr2 (5 HSPs)
chr2 (92-176)||(24950588-24950672)
chr2 (96-154)||(23190806-23190864)
chr2 (96-154)||(23612061-23612119)
chr2 (96-154)||(23615716-23615774)
chr2 (186-224)||(24950527-24950565)
[»] scaffold1701 (1 HSPs)
scaffold1701 (132-224)||(1353-1457)
[»] scaffold0323 (1 HSPs)
scaffold0323 (96-151)||(4011-4066)
[»] scaffold0051 (2 HSPs)
scaffold0051 (96-154)||(79275-79333)
scaffold0051 (186-224)||(79195-79233)
[»] scaffold0193 (1 HSPs)
scaffold0193 (96-177)||(27356-27437)
[»] chr4 (2 HSPs)
chr4 (94-154)||(14557476-14557536)
chr4 (96-154)||(13277812-13277870)
[»] scaffold0040 (1 HSPs)
scaffold0040 (96-175)||(40796-40875)
[»] chr6 (2 HSPs)
chr6 (96-154)||(23496035-23496093)
chr6 (186-224)||(23495954-23495992)
[»] chr5 (1 HSPs)
chr5 (92-154)||(21529793-21529855)
[»] scaffold0270 (1 HSPs)
scaffold0270 (94-154)||(15798-15858)
[»] scaffold0081 (1 HSPs)
scaffold0081 (96-176)||(44842-44922)
[»] scaffold0022 (1 HSPs)
scaffold0022 (102-154)||(57982-58034)


Alignment Details
Target: chr3 (Bit Score: 105; Significance: 1e-52; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 90 - 233
Target Start/End: Complemental strand, 10792046 - 10791892
Alignment:
90 atcatcaaaaacaactgctccacgcgatgattgacatctgtccagtatcaaaagctatatatgactgcgagtcatacttttgctct-----------ttt 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||           |||    
10792046 atcatcaaaaacaactgctccacgcgatgattgacatctgtccagtatcaaaagttatatatgactgcgagtcatacttttgctcttactttgctccttt 10791947  T
179 tagttacttttactcctttcaccatccccttcttctaccttacgatccagaatac 233  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
10791946 tagttacttttactcttttcaccatccccttcttctaccttacgatccaaaatac 10791892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 96 - 224
Target Start/End: Original strand, 14683746 - 14683886
Alignment:
96 aaaaacaactgctccacgcgatgattgacatctgtccagtatcaaaagctatatatgactgcgagtcatacttttgctctt------------tttagtt 183  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||   ||||||||||||| |||||            ||||||     
14683746 aaaaacaactgttccatgcgatgattgacatctgtccagtatcaaaagctatatatgaccctgagtcatacttttactcttacttcatttctctttagtc 14683845  T
184 acttttactcctttcaccatccccttcttctaccttacgat 224  Q
    | |||||||  ||||||||||||||||||||||||||||||    
14683846 atttttactattttcaccatccccttcttctaccttacgat 14683886  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 7342060 - 7342121
Alignment:
93 atcaaaaacaactgctccacgcgatgattgacatctgtccagtatcaaaagctatatatgac 154  Q
    |||||||||||| | |||| ||||||||||||||||||||| ||||||||||||||||||||    
7342060 atcaaaaacaaccgttccatgcgatgattgacatctgtccaatatcaaaagctatatatgac 7342121  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 7342157 - 7342203
Alignment:
178 ttagttacttttactcctttcaccatccccttcttctaccttacgat 224  Q
    ||||||  |||||||| ||||||||||||||||||||||||| ||||    
7342157 ttagtttattttactcttttcaccatccccttcttctaccttgcgat 7342203  T

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Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 90 - 227
Target Start/End: Original strand, 41369247 - 41369395
Alignment:
90 atcatcaaaaacaactgctccacgcgatgattgacatctgtccagtatcaaaagctatatatgactgcgagtcatacttttgctctt-----------tt 178  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||           ||    
41369247 atcataaaaaacaactgttccacgcgatgattgacatctgtccagtatcaaaagctatatatgactatgagtcatacttttgctcttacttcatttcctt 41369346  T
179 tagttacttttactcctttcaccatccccttcttctaccttacgatcca 227  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
41369347 tagttacttttactcttttcaccatccccttcttctaccttacgatcca 41369395  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 22085941 - 22085857
Alignment:
92 catcaaaaacaactgctccacgcgatgattgacatctgtccagtatcaaaagctatatatgactgcgagtcatacttttgctctt 176  Q
    ||||||||||||||| |||| |||||||||||||||||||||  |||||||||||||||||||   ||||||||||||| |||||    
22085941 catcaaaaacaactgttccatgcgatgattgacatctgtccaacatcaaaagctatatatgaccctgagtcatacttttactctt 22085857  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Complemental strand, 22085836 - 22085798
Alignment:
186 ttttactcctttcaccatccccttcttctaccttacgat 224  Q
    |||||||| ||||||||||||||||||||| ||||||||    
22085836 ttttactcttttcaccatccccttcttctaacttacgat 22085798  T

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Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 90 - 227
Target Start/End: Complemental strand, 1734852 - 1734704
Alignment:
90 atcatcaaaaacaactgctccacgcgatgattgacatctgtccagtatcaaaagctatatatgactgcgagtcatacttttgctct-----------ttt 178  Q
    ||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||           |||    
1734852 atcatcaaaaacaactattccacgcgatgattgacatctgtccaatatcaaaagctatatatgactctgagtcatacttttgctcttacttcgtttcttt 1734753  T
179 tagttacttttactcctttcaccatccccttcttctaccttacgatcca 227  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||    
1734752 tagttacttttactcttttcaccatccccttcttctactttacgatcca 1734704  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 22333995 - 22334051
Alignment:
95 caaaaacaactgctccacgcgatgattgacatctgtccagtatcaaaagctatatat 151  Q
    |||||||||| | ||||||||||  |||||||||||| | ||||||| |||||||||    
22333995 caaaaacaaccgttccacgcgattgttgacatctgtcaaatatcaaaggctatatat 22334051  T

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Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 92 - 224
Target Start/End: Original strand, 14324305 - 14324449
Alignment:
92 catcaaaaacaactgctccacgcgatgattgacatctgtccagtatcaaaagctatatatgactgcgagtcatacttttgc------------tcttttt 179  Q
    ||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||   ||||||||||||| |            ||| |||    
14324305 catcaaaaacaactgttccatgcgatgattgacatctgttcagtatcaaaagctatatatgaccctgagtcatacttttacttttacttcgtttctcttt 14324404  T
180 agttacttttactcctttcaccatccccttcttctaccttacgat 224  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||    
14324405 agttatttttactcttttcaccatccccttcttctaccttacgat 14324449  T

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Target: scaffold0101 (Bit Score: 53; Significance: 1e-21; HSPs: 4)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 92 - 176
Target Start/End: Original strand, 46862 - 46946
Alignment:
92 catcaaaaacaactgctccacgcgatgattgacatctgtccagtatcaaaagctatatatgactgcgagtcatacttttgctctt 176  Q
    ||||||||||||||| |||| |||||||||||||||||||||  |||||||||||||||||||   ||||||||||||| |||||    
46862 catcaaaaacaactgttccatgcgatgattgacatctgtccaacatcaaaagctatatatgaccctgagtcatacttttactctt 46946  T

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Target: scaffold0101; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 92 - 176
Target Start/End: Original strand, 51500 - 51584
Alignment:
92 catcaaaaacaactgctccacgcgatgattgacatctgtccagtatcaaaagctatatatgactgcgagtcatacttttgctctt 176  Q
    ||||||||||||||| |||| |||||||||||||||||||||  |||||||||||||||||||   ||||||||||||| |||||    
51500 catcaaaaacaactgttccatgcgatgattgacatctgtccaacatcaaaagctatatatgaccctgagtcatacttttactctt 51584  T

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Target: scaffold0101; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 46967 - 47005
Alignment:
186 ttttactcctttcaccatccccttcttctaccttacgat 224  Q
    |||||||| ||||||||||||||||||||| ||||||||    
46967 ttttactcttttcaccatccccttcttctaacttacgat 47005  T

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Target: scaffold0101; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 51605 - 51643
Alignment:
186 ttttactcctttcaccatccccttcttctaccttacgat 224  Q
    |||||||| ||||||||||||||||||||| ||||||||    
51605 ttttactcttttcaccatccccttcttctaacttacgat 51643  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 24950672 - 24950588
Alignment:
92 catcaaaaacaactgctccacgcgatgattgacatctgtccagtatcaaaagctatatatgactgcgagtcatacttttgctctt 176  Q
    ||||||||||||| | |||| ||||||||||||||||||||| ||||||||||||||||||||   |||||||| |||| |||||    
24950672 catcaaaaacaaccgttccatgcgatgattgacatctgtccaatatcaaaagctatatatgaccctgagtcatatttttactctt 24950588  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 154
Target Start/End: Original strand, 23190806 - 23190864
Alignment:
96 aaaaacaactgctccacgcgatgattgacatctgtccagtatcaaaagctatatatgac 154  Q
    ||||||||||| |||| ||||||||||||||||||| |  |||||| ||||||||||||    
23190806 aaaaacaactgttccatgcgatgattgacatctgtcaaacatcaaaggctatatatgac 23190864  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 154
Target Start/End: Original strand, 23612061 - 23612119
Alignment:
96 aaaaacaactgctccacgcgatgattgacatctgtccagtatcaaaagctatatatgac 154  Q
    ||||||||||| |||| ||||||||||||||||||| |  |||||| ||||||||||||    
23612061 aaaaacaactgttccatgcgatgattgacatctgtcaaacatcaaaggctatatatgac 23612119  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 154
Target Start/End: Original strand, 23615716 - 23615774
Alignment:
96 aaaaacaactgctccacgcgatgattgacatctgtccagtatcaaaagctatatatgac 154  Q
    ||||||||||| |||| ||||||||||||||||||| |  |||||| ||||||||||||    
23615716 aaaaacaactgttccatgcgatgattgacatctgtcaaacatcaaaggctatatatgac 23615774  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 186 - 224
Target Start/End: Complemental strand, 24950565 - 24950527
Alignment:
186 ttttactcctttcaccatccccttcttctaccttacgat 224  Q
    |||||||| ||||||||||||||||||||||||||||||    
24950565 ttttactcttttcaccatccccttcttctaccttacgat 24950527  T

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Target: scaffold1701 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold1701
Description:

Target: scaffold1701; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 1457 - 1353
Alignment:
132 cagtatcaaaagctatatatgactgcgagtcatacttttgctctt------------tttagttacttttactcctttcaccatccccttcttctacctt 219  Q
    |||||||||||||||||||||||   ||||||||||||| |||||            |||||||| |||||||| |||||||||||||||||||||||||    
1457 cagtatcaaaagctatatatgaccctgagtcatacttttactcttacttcgtttctctttagttatttttactcttttcaccatccccttcttctacctt 1358  T
220 acgat 224  Q
    |||||    
1357 acgat 1353  T

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Target: scaffold0323 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 96 - 151
Target Start/End: Complemental strand, 4066 - 4011
Alignment:
96 aaaaacaactgctccacgcgatgattgacatctgtccagtatcaaaagctatatat 151  Q
    ||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||||    
4066 aaaaacaactgttccatgcgatgattgacatctgtccaatatcaaaggctatatat 4011  T

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Target: scaffold0051 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 154
Target Start/End: Complemental strand, 79333 - 79275
Alignment:
96 aaaaacaactgctccacgcgatgattgacatctgtccagtatcaaaagctatatatgac 154  Q
    ||||||||||| |||| |||||||||||||||||||||  |||||| ||||||||||||    
79333 aaaaacaactgttccatgcgatgattgacatctgtccaacatcaaaggctatatatgac 79275  T

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Target: scaffold0051; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Complemental strand, 79233 - 79195
Alignment:
186 ttttactcctttcaccatccccttcttctaccttacgat 224  Q
    |||||||| |||||||||| |||||||||||||||||||    
79233 ttttactcttttcaccatctccttcttctaccttacgat 79195  T

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Target: scaffold0193 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 177
Target Start/End: Original strand, 27356 - 27437
Alignment:
96 aaaaacaactgctccacgcgatgattgacatctgtccagtatcaaaagctatatatgactgcgagtcatacttttgctcttt 177  Q
    |||||||||||  ||| ||||| ||||||||||||| | ||||||| ||||||||||||   ||||||||||||| ||||||    
27356 aaaaacaactgtcccatgcgatcattgacatctgtcaaatatcaaaggctatatatgaccttgagtcatacttttactcttt 27437  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 14557476 - 14557536
Alignment:
94 tcaaaaacaactgctccacgcgatgattgacatctgtccagtatcaaaagctatatatgac 154  Q
    ||||||||||||| |||| |||||||||||||||||||  | |||||| ||||||||||||    
14557476 tcaaaaacaactgttccatgcgatgattgacatctgtcaggcatcaaaggctatatatgac 14557536  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 154
Target Start/End: Original strand, 13277812 - 13277870
Alignment:
96 aaaaacaactgctccacgcgatgattgacatctgtccagtatcaaaagctatatatgac 154  Q
    ||||||||||| ||||||||||| |||||||||||| |  |||||| ||||||||||||    
13277812 aaaaacaactgttccacgcgatggttgacatctgtcaaacatcaaaggctatatatgac 13277870  T

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Target: scaffold0040 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 175
Target Start/End: Complemental strand, 40875 - 40796
Alignment:
96 aaaaacaactgctccacgcgatgattgacatctgtccagtatcaaaagctatatatgactgcgagtcatacttttgctct 175  Q
    ||||||||||| ||||||||||| |||||||||||| |  |||||| ||||||||||||  |  ||||||||||| ||||    
40875 aaaaacaactgttccacgcgatggttgacatctgtcaaacatcaaaggctatatatgacctcaggtcatacttttactct 40796  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 154
Target Start/End: Complemental strand, 23496093 - 23496035
Alignment:
96 aaaaacaactgctccacgcgatgattgacatctgtccagtatcaaaagctatatatgac 154  Q
    ||||||||||| |||| ||||||||||||||||||| |  |||||| ||||||||||||    
23496093 aaaaacaactgttccatgcgatgattgacatctgtcaaacatcaaaggctatatatgac 23496035  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Complemental strand, 23495992 - 23495954
Alignment:
186 ttttactcctttcaccatccccttcttctaccttacgat 224  Q
    |||||||| |||||||||| |||||||||||||||||||    
23495992 ttttactcttttcaccatctccttcttctaccttacgat 23495954  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 154
Target Start/End: Complemental strand, 21529855 - 21529793
Alignment:
92 catcaaaaacaactgctccacgcgatgattgacatctgtccagtatcaaaagctatatatgac 154  Q
    ||||||||||||| | |||| |||||  |||||||||||| | ||||||| ||||||||||||    
21529855 catcaaaaacaaccgttccatgcgatcgttgacatctgtcaaatatcaaaggctatatatgac 21529793  T

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Target: scaffold0270 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 15798 - 15858
Alignment:
94 tcaaaaacaactgctccacgcgatgattgacatctgtccagtatcaaaagctatatatgac 154  Q
    ||||||||||||| ||||||||||| ||| ||||||||    |||||| ||||||||||||    
15798 tcaaaaacaactgttccacgcgatggttgtcatctgtcagacatcaaaggctatatatgac 15858  T

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Target: scaffold0081 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 176
Target Start/End: Original strand, 44842 - 44922
Alignment:
96 aaaaacaactgctccacgcgatgattgacatctgtccagtatcaaaagctatatatgactgcgagtcatacttttgctctt 176  Q
    ||||||||| |  ||| ||||| | ||||||||||| | ||||||| ||||||||||||   ||||||||||||| |||||    
44842 aaaaacaaccgtcccatgcgatcaatgacatctgtcaaatatcaaaggctatatatgaccttgagtcatacttttactctt 44922  T

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Target: scaffold0022 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 58034 - 57982
Alignment:
102 aactgctccacgcgatgattgacatctgtccagtatcaaaagctatatatgac 154  Q
    ||||| ||||||||||| |||||||||||| |  |||||| ||||||||||||    
58034 aactgttccacgcgatggttgacatctgtcaaacatcaaaggctatatatgac 57982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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