View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0482_low_40 (Length: 228)
Name: NF0482_low_40
Description: NF0482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0482_low_40 |
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| [»] chr3 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 89 - 228
Target Start/End: Complemental strand, 26431526 - 26431387
Alignment:
| Q |
89 |
aagctaaagacccccgaaaaattcaaactgttgatttggctggcttgccacaatgcgatcccgactttatcacttctccatcaccgtcaaatggctcctt |
188 |
Q |
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|||||||||||| | ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
26431526 |
aagctaaagaccgcagaaaaattcaatctgttgatttggttggcttgccacaatgcgatcccgactttatcacttctccaccaccgtcagatggctcctt |
26431427 |
T |
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| Q |
189 |
cctccacctgttcgagatgtggcgaagaagaagaaaccat |
228 |
Q |
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| T |
26431426 |
cctcaacctgttcgcgatgtggcgaagacgaagaaaccat |
26431387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 89 - 228
Target Start/End: Original strand, 11898467 - 11898606
Alignment:
| Q |
89 |
aagctaaagacccccgaaaaattcaaactgttgatttggctggcttgccacaatgcgatcccgactttatcacttctccatcaccgtcaaatggctcctt |
188 |
Q |
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||||||||| |||| ||||||||||||||||| |||||| | |||||||| || || ||||||||| | || |||||| | |||||||| ||||| || | |
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| T |
11898467 |
aagctaaagtcccctgaaaaattcaaactgtttatttggttagcttgccataacgccatcccgactatgtctcttctcgaacaccgtcatatggccccct |
11898566 |
T |
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| Q |
189 |
cctccacctgttcgagatgtggcgaagaagaagaaaccat |
228 |
Q |
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| T |
11898567 |
cttccacctgttccagatgtggagaagacgaagaaaccat |
11898606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 116 - 205
Target Start/End: Original strand, 53321255 - 53321344
Alignment:
| Q |
116 |
ctgttgatttggctggcttgccacaatgcgatcccgactttatcacttctccatcaccgtcaaatggctccttcctccacctgttcgaga |
205 |
Q |
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| T |
53321255 |
ctgttgatttggctggcttgccacaatgcgatcccgactttatcacttctccatcaccgtcaaatggctccctcctccacctgttcgaga |
53321344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 89 - 228
Target Start/End: Complemental strand, 14652508 - 14652369
Alignment:
| Q |
89 |
aagctaaagacccccgaaaaattcaaactgttgatttggctggcttgccacaatgcgatcccgactttatcacttctccatcaccgtcaaatggctcctt |
188 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||| |||||||| ||||| || |||||||| | |
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| T |
14652508 |
aagctaaaatcccccgaaaaattcaaactgttgatttggctggcttgccataacgcgatcccgactctatctcttctccaacaccgacatatggctccct |
14652409 |
T |
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| Q |
189 |
cctccacctgttcgagatgtggcgaagaagaagaaaccat |
228 |
Q |
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| T |
14652408 |
cttctacctgttcgagatgtggagaagacgaagaaaccat |
14652369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 89 - 228
Target Start/End: Original strand, 20286168 - 20286307
Alignment:
| Q |
89 |
aagctaaagacccccgaaaaattcaaactgttgatttggctggcttgccacaatgcgatcccgactttatcacttctccatcaccgtcaaatggctcctt |
188 |
Q |
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||||||||| |||| ||||||||||||||||| |||||| | |||||||| || || ||||||||| | || |||||| | |||||||| ||||| || | |
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| T |
20286168 |
aagctaaagtcccctgaaaaattcaaactgttcatttggttagcttgccataacgccatcccgactatgtctcttctcgaacaccgtcatatggccccct |
20286267 |
T |
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| Q |
189 |
cctccacctgttcgagatgtggcgaagaagaagaaaccat |
228 |
Q |
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| T |
20286268 |
cttccacctgttccagatgtggagaagacgaagaaaccat |
20286307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 210
Target Start/End: Original strand, 24530277 - 24530383
Alignment:
| Q |
104 |
gaaaaattcaaactgttgatttggctggcttgccacaatgcgatcccgactttatcacttctccatcaccgtcaaatggctccttcctccacctgttcga |
203 |
Q |
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||||||||||| |||||||||||||| | ||||||||| || | || ||||||| || ||||||||| ||| || ||||| || | |||||||||| |
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| T |
24530277 |
gaaaaattcaagctgttgatttggctagtttgccacaacgctgttccagctttatccctgatccatcaccatcacatagctccctctactacctgttcga |
24530376 |
T |
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| Q |
204 |
gatgtgg |
210 |
Q |
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||||||| |
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| T |
24530377 |
gatgtgg |
24530383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 228
Target Start/End: Complemental strand, 23131413 - 23131274
Alignment:
| Q |
89 |
aagctaaagacccccgaaaaattcaaactgttgatttggctggcttgccacaatgcgatcccgactttatcacttctccatcaccgtcaaatggctcctt |
188 |
Q |
| |
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||||||||| |||| |||||||||||||||||||||||| | |||||||| || || || ||||| | || ||| || | |||||||| ||||| || | |
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| T |
23131413 |
aagctaaagtcccctgaaaaattcaaactgttgatttggttagcttgccataacgccattccgacaatgtctcttttcgaacaccgtcatatggccccct |
23131314 |
T |
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| Q |
189 |
cctccacctgttcgagatgtggcgaagaagaagaaaccat |
228 |
Q |
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| ||||||||||| |||||||| ||||| ||||||||||| |
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| T |
23131313 |
cttccacctgttccagatgtggagaagacgaagaaaccat |
23131274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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