View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0482_low_41 (Length: 224)

Name: NF0482_low_41
Description: NF0482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0482_low_41
NF0482_low_41
[»] chr2 (1 HSPs)
chr2 (1-144)||(44692347-44692490)
[»] chr6 (1 HSPs)
chr6 (3-85)||(12830039-12830121)
[»] chr4 (1 HSPs)
chr4 (18-59)||(34866736-34866777)


Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 44692490 - 44692347
Alignment:
Q  1 ccatattcgccaccatagcctctttttggtttgacatagagaacaatctaggatatttacctcgaaagggaactccacccctccatctcgcataccaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44692490 ccatattcgccaccatagcctctttttggtttgacatagagaacaatctagaatatttacctcgaaagggaactccacccctccatctcgcataccaaaa 44692391  T
Q  101 cttagtattaaccccgttcctcaccttcctagccacctcttcat 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  44692390 cttagtattaaccccgttcctcaccttcctagccacctcttcat 44692347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 12830121 - 12830039
Alignment:
Q  3 atattcgccaccatagcctctttttggtttgacatagagaacaatctaggatatttacctcgaaagggaactccacccctcca 85  Q
    |||| ||||||||| ||||||||||||||| |||| | ||| ||||| ||||||||| | || |||| ||| |||||||||||    
T  12830121 atatccgccaccattgcctctttttggtttaacattgcgaataatcttggatatttatcacggaaggcaacaccacccctcca 12830039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 34866736 - 34866777
Alignment:
Q  18 gcctctttttggtttgacatagagaacaatctaggatattta 59  Q
    |||||||||||||| ||||||||||| |||||||||||||||    
T  34866736 gcctctttttggttcgacatagagaataatctaggatattta 34866777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University