View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0482_low_42 (Length: 201)

Name: NF0482_low_42
Description: NF0482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0482_low_42
NF0482_low_42
[»] chr4 (2 HSPs)
chr4 (110-201)||(10246245-10246336)
chr4 (110-170)||(10246179-10246239)
[»] chr3 (3 HSPs)
chr3 (110-177)||(4823541-4823608)
chr3 (122-176)||(11661846-11661900)
chr3 (110-177)||(22303785-22303853)
[»] chr8 (2 HSPs)
chr8 (110-159)||(3669945-3669994)
chr8 (110-159)||(1014095-1014144)
[»] chr1 (1 HSPs)
chr1 (110-159)||(26661748-26661797)
[»] chr2 (2 HSPs)
chr2 (110-168)||(29676787-29676844)
chr2 (110-159)||(14745517-14745566)
[»] chr5 (2 HSPs)
chr5 (111-164)||(795196-795249)
chr5 (110-159)||(9498507-9498556)
[»] chr7 (1 HSPs)
chr7 (133-177)||(37533215-37533259)


Alignment Details
Target: chr4 (Bit Score: 84; Significance: 4e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 110 - 201
Target Start/End: Original strand, 10246245 - 10246336
Alignment:
Q  110 acaagcaacaagtggcttcttgtgcagcaacggctatacatgcaaagtaaaaagcttccactctagggtagcgactcacgcttgagggggag 201  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10246245 acaagcaacaagtggcttcttgtgcagcaatggctatacatgcaaagtaaaaagcttccactctaggggagcgactcacgcttgagggggag 10246336  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 10246179 - 10246239
Alignment:
Q  110 acaagcaacaagtggcttcttgtgcagcaacggctatacatgcaaagtaaaaagcttccac 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10246179 acaagcaacaagtggcttcttgtgcagcaacggctatacatgcaaagtaaaaagcttccac 10246239  T

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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 110 - 177
Target Start/End: Original strand, 4823541 - 4823608
Alignment:
Q  110 acaagcaacaagtggcttcttgtgcagcaacggctatacatgcaaagtaaaaagcttccactctaggg 177  Q
    ||||||||||||||||| ||||||||| || ||| |||||||||||||||||||||||| ||||||||    
T  4823541 acaagcaacaagtggctccttgtgcaggaatggcgatacatgcaaagtaaaaagcttccgctctaggg 4823608  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 11661846 - 11661900
Alignment:
Q  122 tggcttcttgtgcagcaacggctatacatgcaaagtaaaaagcttccactctagg 176  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  11661846 tggctccttgtgcagcaacggcgatacatgcaaagtaaaaagcttccgctctagg 11661900  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 110 - 177
Target Start/End: Complemental strand, 22303853 - 22303785
Alignment:
Q  110 acaagcaacaagtggcttcttgtgcagcaacggctatacatgc-aaagtaaaaagcttccactctaggg 177  Q
    ||||||| |||||||||||||||||||||||||| || || || |||||||||||||||| || |||||    
T  22303853 acaagcagcaagtggcttcttgtgcagcaacggcgattcaggcaaaagtaaaaagcttccgctttaggg 22303785  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 3669945 - 3669994
Alignment:
Q  110 acaagcaacaagtggcttcttgtgcagcaacggctatacatgcaaagtaa 159  Q
    ||||||||||||||||| ||||||||| |||||| |||||||||||||||    
T  3669945 acaagcaacaagtggctccttgtgcaggaacggcgatacatgcaaagtaa 3669994  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 1014144 - 1014095
Alignment:
Q  110 acaagcaacaagtggcttcttgtgcagcaacggctatacatgcaaagtaa 159  Q
    ||||||| ||||||||| ||||||||| |||| | |||||||||||||||    
T  1014144 acaagcagcaagtggctccttgtgcaggaacgacgatacatgcaaagtaa 1014095  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 26661797 - 26661748
Alignment:
Q  110 acaagcaacaagtggcttcttgtgcagcaacggctatacatgcaaagtaa 159  Q
    ||||||||||||||||| |||||||||||||| | |||||||||||||||    
T  26661797 acaagcaacaagtggctccttgtgcagcaacgacgatacatgcaaagtaa 26661748  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 29676787 - 29676844
Alignment:
Q  110 acaagcaacaagtggcttcttgtgcagcaacggctatacatgcaaagtaaaaagcttcc 168  Q
    ||||||| ||||||||| |||||||||||||||  ||||| || |||||||||||||||    
T  29676787 acaagcagcaagtggctccttgtgcagcaacggaaatacaagc-aagtaaaaagcttcc 29676844  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 14745566 - 14745517
Alignment:
Q  110 acaagcaacaagtggcttcttgtgcagcaacggctatacatgcaaagtaa 159  Q
    ||||||||||||||||| ||||||||| |||||| |||||  ||||||||    
T  14745566 acaagcaacaagtggctccttgtgcaggaacggcgatacagacaaagtaa 14745517  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 795249 - 795196
Alignment:
Q  111 caagcaacaagtggcttcttgtgcagcaacggctatacatgcaaagtaaaaagc 164  Q
    |||||| ||||||||| |||||||||||||||  |||||  |||||||||||||    
T  795249 caagcagcaagtggctccttgtgcagcaacggtgatacagacaaagtaaaaagc 795196  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 9498556 - 9498507
Alignment:
Q  110 acaagcaacaagtggcttcttgtgcagcaacggctatacatgcaaagtaa 159  Q
    ||||||| ||||||||| ||||||||| |||||  |||||||||||||||    
T  9498556 acaagcagcaagtggctccttgtgcaggaacggtgatacatgcaaagtaa 9498507  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 37533259 - 37533215
Alignment:
Q  133 gcagcaacggctatacatgcaaagtaaaaagcttccactctaggg 177  Q
    ||||||||||| |||||  ||||||||||||||||| ||||||||    
T  37533259 gcagcaacggcgatacagacaaagtaaaaagcttccgctctaggg 37533215  T

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