View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0482_low_5 (Length: 440)
Name: NF0482_low_5
Description: NF0482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0482_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 35 - 405
Target Start/End: Original strand, 7895256 - 7895640
Alignment:
| Q |
35 |
caatgtccaattattaggactttgttcctatactgaaattggacacattttaccaagcatgttttcatgtcagtctttaacacatctta-gctttgtact |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7895256 |
caatgtccaattattaggactttgttcctatactgaaattggacacattttaccaagcatgttttcatgtcagtctttaacacatcttaagctttgtact |
7895355 |
T |
|
| Q |
134 |
ttaccctaatggaggtcatgaaacactgtttccaaaatctttcaatttgccgacatatattaactagtttgcaactacaaaattttggattttgcgttgg |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7895356 |
ttaccctaatggaggtcatgaaacactgtttccaaaatctttcaatttgccgacatatattaactagtttgcaactacaaaattttggattttgcgttgg |
7895455 |
T |
|
| Q |
234 |
t-------------ccgagccattttcaacttttaacaagttgaatagtttgctccttaccaattgtaccttgaatcgtgcaggaacccttcgcatatca |
320 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||| |
|
|
| T |
7895456 |
tgataattatcgtgccgagccattttcaacttttaacaagttgaatagtttgctccttaccaattgtaccttgaatcgtgtaggaactctttgcatatca |
7895555 |
T |
|
| Q |
321 |
agtgtgacgcttgttaattttactatgtataatcgttttcatagattttacaagtaattccacatcaaaaggagcctcctttgtt |
405 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7895556 |
agtgtgacccttgttaattttactatgtataatcgttttcatagattttacaagtaattccacatcaaaaggagcctcctttgtt |
7895640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 93 - 358
Target Start/End: Complemental strand, 7976572 - 7976298
Alignment:
| Q |
93 |
atgttttcatgtcagtctttaacacatctta-gctttgtactttaccctaatggaggtcatgaaacactgtttccaaaatctttcaatttgccgacatat |
191 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
7976572 |
atgttttcatgtcatactttaacacatcttaagctttctactt-accctaatggaggtcatgaaacattgtttccaaaatctttcaatttgccggc---- |
7976478 |
T |
|
| Q |
192 |
attaactagtttgcaactacaaaattttggattttgcgttggt-------------ccgagccattttcaacttttaacaagttgaatagtttgctcctt |
278 |
Q |
| |
|
| ||||||| ||||||||| | | ||||||||||||| ||||| | ||||| ||||| || ||||||||||||||||||||| || || |
|
|
| T |
7976477 |
actaactagcttgcaactagagagttttggattttgccttggtgataatgatcgtgctgagcctttttcgacatttaacaagttgaatagtttgatcatt |
7976378 |
T |
|
| Q |
279 |
accaattgtaccttgaatcgtgcaggaacccttcgcatatcaagtgtgacgcttgttaattttactatgtataatcgttt |
358 |
Q |
| |
|
||||||| |||||||| | |||||||||||||| |||||||||||| |||||| | || || |||||||||| |||||| |
|
|
| T |
7976377 |
accaattctaccttgagtggtgcaggaaccctttgcatatcaagtgctacgcttatgaacttaactatgtatactcgttt |
7976298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 90 - 184
Target Start/End: Complemental strand, 45870307 - 45870213
Alignment:
| Q |
90 |
agcatgttttcatgtcagtctttaacacatctta-gctttgtactttaccctaatggaggtcatgaaacactgtttccaaaatctttcaatttgcc |
184 |
Q |
| |
|
|||||||||||||||||| || |||||||||||| ||||| || | |||||||||| |||||||||||||||||||||||||| || ||||||| |
|
|
| T |
45870307 |
agcatgttttcatgtcagactctaacacatcttaagctttcta-tctaccctaatgatcgtcatgaaacactgtttccaaaatctatcgatttgcc |
45870213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 233
Target Start/End: Complemental strand, 2996227 - 2996110
Alignment:
| Q |
112 |
taacacatctta-gctttgtactttaccctaatggaggtcatgaaacactgtttccaaaatctttcaatttgccgacatatattaactagtttgcaacta |
210 |
Q |
| |
|
|||||||||||| |||||||| ||||| ||| ||||||||||||||| |||||||||||||||||||||| || | ||| ||||| ||| ||||| |
|
|
| T |
2996227 |
taacacatcttaagctttgta-tttacaataaaggaggtcatgaaacaatgtttccaaaatctttcaatttatcggc----attgactagcttgtaacta |
2996133 |
T |
|
| Q |
211 |
caaaattttggattttgcgttgg |
233 |
Q |
| |
|
|||||||||| |||||| ||||| |
|
|
| T |
2996132 |
caaaattttgaattttgtgttgg |
2996110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 286
Target Start/End: Complemental strand, 2996095 - 2996044
Alignment:
| Q |
235 |
ccgagccattttcaacttttaacaagttgaatagtttgctccttaccaattg |
286 |
Q |
| |
|
||||||||||||| |||||||||| |||||||| ||||||| || ||||||| |
|
|
| T |
2996095 |
ccgagccattttcgacttttaacaggttgaataatttgctcatttccaattg |
2996044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 324
Target Start/End: Complemental strand, 45856484 - 45856400
Alignment:
| Q |
240 |
ccattttcaacttttaacaagttgaatagtttgctccttaccaattgtaccttgaatcgtgcaggaacccttcgcatatcaagtg |
324 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| ||||| ||||||| | ||||| ||||| ||||||| |||||||||||| |
|
|
| T |
45856484 |
ccattttcaacctttaaacggttgaatagtttggtcctttacaattgtgctttgaaggatgcagtaaccctttgcatatcaagtg |
45856400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 44501059 - 44500999
Alignment:
| Q |
235 |
ccgagccattttcaacttttaacaagttgaatagtttgctccttaccaattgtaccttgaa |
295 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||| ||||| | |||||||| |||| |
|
|
| T |
44501059 |
ccgagccattttcaacctttaacagattgaatagtttggtccttcacgattgtaccgtgaa |
44500999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 3978480 - 3978516
Alignment:
| Q |
149 |
tcatgaaacactgtttccaaaatctttcaatttgccg |
185 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
3978480 |
tcatgaaacaccgtttccaaaatctctcaatttgccg |
3978516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 3978575 - 3978615
Alignment:
| Q |
235 |
ccgagccattttcaacttttaacaagttgaatagtttgctc |
275 |
Q |
| |
|
||||||||||||| | |||||||| |||||||||||||||| |
|
|
| T |
3978575 |
ccgagccattttcgatttttaacaggttgaatagtttgctc |
3978615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1378 times since January 2019
Visitors: 3446